Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005181`

染色体: Chr02 坐标: 73097487-73107186 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005181`
名称	SmilChr02G005181
描述	protein DETOXIFICATION 40-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73097487 - 73107186 / `-`

ID 对照

NCBI Gene ID	`LOC131009174`
GeneID	`131009174`
locus_tag	`-`
NCBI Name	`LOC131009174`
原始查询	`SmilChr02G005181`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 40-like
产物	protein DETOXIFICATION 40-like
Arabidopsis	`AT3G21690` (AT3G21690) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:821723] identity=67.6; qcov=1; evalue=0; confidence=high
Rice	`Os03g0571900` (PEZ1) - identity=70; qcov=0.923; evalue=0; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131009174

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057792400.1`
2	Vacuole	液泡	0.60000	`XP_057792400.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057792400.1`
4	Nucleus	细胞核	0.00000	`XP_057792400.1`
5	Chromosome	染色体	0.00000	`XP_057792400.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73097649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr2:73097687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,B9
`Chr2:73098716`	`CAA`	`C`	2bp_deletion	frameshift_variant	4	B10,B67,B86,C77
`Chr2:73098716`	`CAA`	`C`	2bp_deletion	CDS_variant	4	B10,B67,B86,C77
`Chr2:73098719`	`A`	`AC`	1bp_insertion	frameshift_variant	163	A1,A11,A13,A16,A20,A21,A22,A23,A24,A5,A6,A7,A9,B1,B10,B100,B101,B103,B104,B105,B107,B108,B109,B11,B110,B111,B113,B114,B115,B119,B124,B125,B126,B127,B130,B131,B132,B133,B134,B135,B136,B137,B138,B14,B19,B2,B20,B22,B24,B25,B26,B28,B29,B3,B30,B31,B34,B35,B36,B40,B42,B43,B44,B47,B48,B5,B50,B51,B52,B53,B56,B57,B58,B60,B62,B63,B64,B67,B68,B71,B72,B76,B77,B79,B8,B80,B81,B82,B83,B84,B85,B87,B89,B9,B90,B91,B92,B95,B96,B97,B98,C10,C11,C14,C15,C18,C2,C20,C22,C23,C25,C26,C28,C29,C3,C31,C32,C33,C35,C37,C4,C44,C45,C46,C48,C49,C5,C50,C53,C54,C55,C56,C57,C6,C60,C61,C62,C63,C65,C67,C68,C69,C7,C71,C72,C74,C75,C76,C79,C8,C81,C82,C83,C85,C87,C9,D1,D11,D3,D4,D6,D8,D9
`Chr2:73098796`	`A`	`AT`	1bp_insertion	frameshift_variant	21	A2,B102,B108,B13,B139,B16,B30,B33,B61,B67,B73,B86,B88,B93,C15,C18,C58,C72,C77,C78,D6
`Chr2:73098799`	`G`	`GA`	1bp_insertion	frameshift_variant	73	A10,A15,A16,A18,A20,A21,A25,A9,B110,B114,B118,B120,B121,B122,B123,B126,B135,B138,B140,B17,B18,B2,B20,B21,B22,B26,B27,B29,B31,B32,B37,B56,B60,B65,B66,B72,B76,B77,B85,B87,B90,B92,B96,B97,B99,C10,C19,C20,C25,C3,C30,C34,C35,C36,C39,C40,C46,C48,C50,C51,C54,C56,C59,C60,C70,C74,C8,C82,C84,C87,D1,D11,D5
`Chr2:73098893`	`G`	`GA`	1bp_insertion	frameshift_variant	36	A13,A21,A6,A9,B1,B105,B107,B125,B130,B14,B34,B35,B40,B42,B43,B49,B52,B60,B62,B71,B8,C10,C20,C25,C35,C4,C49,C5,C57,C6,C62,C79,C83,C9,D4,D6
`Chr2:73098944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:73099819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr2:73103200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:73105399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,B75,B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792400.1

560 aa

280

560

MatE

PF01554 MatE 65-225 aa PF01554 MatE 287-448 aa

XP_057792401.1

509 aa

254

509

MatE

PF01554 MatE 65-225 aa PF01554 MatE 287-448 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792400.1`	Pfam	`PF01554`	MatE	Family	65	225	6.6e-63	211.9	MatE
`XP_057792400.1`	Pfam	`PF01554`	MatE	Family	287	448	6.6e-63	211.9	MatE
`XP_057792401.1`	Pfam	`PF01554`	MatE	Family	65	225	1.2e-64	217.6	MatE
`XP_057792401.1`	Pfam	`PF01554`	MatE	Family	287	448	1.2e-64	217.6	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936418.1
AAATATCGCAACACACGAATCCTTTGCAGCCACTACTACCACTATAACTCTTTCTCTCTCTCTATATATATATATAATTTTTTTTGAGACGTCTATATATATAATTAATCGATAATATCCCTTCATTAATTTGCATATCAACTTGTGACAAATATGGGGTCCTTTCGCAACGAACACGTGAACGAACCTCTTCTCCACCACAAGCCGCCGCCGCCGCCGCCGCCGGCGGTGGAGGAAGCTAGCTCGGAGTTAGAACAAAC...

XM_057936417.1
AAATATCGCAACACACGAATCCTTTGCAGCCACTACTACCACTATAACTCTTTCTCTCTCTCTATATATATATATAATTTTTTTTGAGACGTCTATATATATAATTAATCGATAATATCCCTTCATTAATTTGCATATCAACTTGTGACAAATATGGGGTCCTTTCGCAACGAACACGTGAACGAACCTCTTCTCCACCACAAGCCGCCGCCGCCGCCGCCGCCGGCGGTGGAGGAAGCTAGCTCGGAGTTAGAACAAAC...

CDS

2 records

下载 CDS FASTA

LOC131009174
ATGGGGTCCTTTCGCAACGAACACGTGAACGAACCTCTTCTCCACCACAAGCCGCCGCCGCCGCCGCCGCCGGCGGTGGAGGAAGCTAGCTCGGAGTTAGAACAAACACTCTCCGACGCCACGTTGTCTTGGCGGCGGCGCTATCAGAAAGCCCTGGTGATCGAGATGAGGTACCTTTTCCGGCTGGCCGGCCCCGCCGTCATAGTCTACTTGCTAAACAACGTGACTTCCATGTCCACCCAAATCTTCTGCGGCCATCT...

Protein

2 records

下载 Protein FASTA

XP_057792400.1
MGSFRNEHVNEPLLHHKPPPPPPPAVEEASSELEQTLSDATLSWRRRYQKALVIEMRYLFRLAGPAVIVYLLNNVTSMSTQIFCGHLGNLELAASSLGNNGIQLLAYGIMLGMGSAVETLCGQAYGAGRYEMLGVYMQRSTVLLTAAGIPLTVAYVFSEPILLFLGQAPELAAAAALFVYGLIPQIFAYAANFAIQKFLQAQSIVNPSAYISAAALAAHVALTWVALYVFRWGLLGAGLVLSFSWWVIVVAQFVYILRSE...

XP_057792401.1
MGSFRNEHVNEPLLHHKPPPPPPPAVEEASSELEQTLSDATLSWRRRYQKALVIEMRYLFRLAGPAVIVYLLNNVTSMSTQIFCGHLGNLELAASSLGNNGIQLLAYGIMLGMGSAVETLCGQAYGAGRYEMLGVYMQRSTVLLTAAGIPLTVAYVFSEPILLFLGQAPELAAAAALFVYGLIPQIFAYAANFAIQKFLQAQSIVNPSAYISAAALAAHVALTWVALYVFRWGLLGAGLVLSFSWWVIVVAQFVYILRSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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