Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005197`

染色体: Chr02 坐标: 73244747-73247675 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005197`
名称	SmilChr02G005197
描述	zinc finger protein MAGPIE-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73244747 - 73247675 / `+`

ID 对照

NCBI Gene ID	`LOC131009250`
GeneID	`131009250`
locus_tag	`-`
NCBI Name	`LOC131009250`
原始查询	`SmilChr02G005197`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein MAGPIE-like
产物	zinc finger protein MAGPIE-like
Arabidopsis	`AT1G03840` (MGP) C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839396] identity=49.3; qcov=1.19; evalue=1.96e-133; confidence=high
Rice	`Os01g0242200` (OsIDD8) - identity=51; qcov=1.02; evalue=8.12e-119; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF12874 (zf-met); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131009250

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792504.1`
2	Chromosome	染色体	0.00000	`XP_057792504.1`
3	Centromere	着丝粒	0.00000	`XP_057792504.1`
4	Chromatin	染色质	0.00000	`XP_057792504.1`
5	Telomere	端粒	0.00000	`XP_057792504.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73245376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C13
`Chr2:73245463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr2:73245631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,D10
`Chr2:73246868`	`C`	`CA`	1bp_insertion	frameshift_variant	2	B34,C35
`Chr2:73246868`	`C`	`CA`	1bp_insertion	CDS_variant	2	B34,C35
`Chr2:73246908`	`C`	`T`	EMS_canonical_SNV	stop_gained	135	A1,A10,A11,A16,A18,A19,A20,A21,A23,A24,A25,A5,A6,A7,A8,B10,B100,B104,B105,B106,B108,B11,B110,B111,B112,B114,B115,B117,B12,B120,B121,B123,B124,B128,B129,B130,B131,B132,B133,B137,B138,B14,B15,B16,B19,B20,B25,B27,B3,B30,B31,B33,B34,B35,B36,B38,B39,B4,B40,B44,B45,B46,B51,B52,B55,B56,B6,B60,B66,B7,B72,B73,B75,B77,B78,B80,B81,B84,B85,B86,B88,B89,B9,B90,B92,B94,B95,B96,C10,C12,C14,C15,C16,C17,C21,C23,C27,C32,C33,C36,C37,C38,C4,C40,C43,C45,C46,C48,C52,C53,C58,C59,C6,C61,C62,C64,C66,C68,C7,C71,C72,C73,C74,C77,C78,C8,C80,C83,C84,C85,C87,C9,D11,D2,D9
`Chr2:73246943`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B132
`Chr2:73246943`	`TC`	`T`	1bp_deletion	CDS_variant	1	B132
`Chr2:73246967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B26
`Chr2:73247062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:73247072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:73247079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B122,B2,C60,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792504.1

412 aa

206

412

zf-met

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF12874 zf-met 67-89 aa PF22996 C2H2-2nd_BIRD-IDD 104-138 aa PF22995 C2CH-3rd_BIRD-IDD 142-166 aa PF22992 C2CH-4th_BIRD-IDD 169-208 aa

XP_057792505.1

403 aa

202

403

zf-met

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF12874 zf-met 58-80 aa PF22996 C2H2-2nd_BIRD-IDD 95-129 aa PF22995 C2CH-3rd_BIRD-IDD 133-157 aa PF22992 C2CH-4th_BIRD-IDD 160-199 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792504.1`	Pfam	`PF12874`	zf-met	Domain	67	89	0.00036	21.5	Zinc-finger of C2H2 type
`XP_057792504.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	104	138	4.5e-20	72.1	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057792504.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	142	166	7e-13	48.7	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057792504.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	169	208	2.8e-23	82.2	BIRD-IDD transcription factor, fourth C2HC zinc finger
`XP_057792505.1`	Pfam	`PF12874`	zf-met	Domain	58	80	0.00034	21.6	Zinc-finger of C2H2 type
`XP_057792505.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	95	129	4.4e-20	72.1	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057792505.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	133	157	6.6e-13	48.8	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057792505.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	160	199	2.7e-23	82.2	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936522.1
AAAATTCCTACAACATAAAAATCTCAGCCGAGTTTGCCAAATCAACATCACATAGCATTTTGAGATCGTTAAATATTAATATTAAAAAATCCCACCCTCTCATTCTCTCTAGTCTCTAGTTTGGAGCCTTCACTACAATACCACCACTTGATGAGAGAGAGAGAGAGTATATCCTTCCAATTCTGCATCAATCAGCTAATAATGTTAATTGCTTGTGTTTGACATCACAGTAAAAGGTATCTTTCAGCAGCTCCTAATTT...

XM_057936521.1
AGATCGTTAAATATTAATATTAAAAAATCCCACCCTCTCATTCTCTCTAGTCTCTAGTTTGGAGCCTTCACTACAATACCACCACTTGATGAGAGAGAGAGAGAGTATATCCTTCCAATTCTGCATCAATCAGCTAATAATGTTAATTGCTTGTGTTTGACATCACAGTAAAAGGTATCTTTCAGCAGCTCCTAATTTTCTTCTATAACCTCATAGATTCATCCCAAACATCTCCAAAAACAAAGATGCCAACCGAGGAA...

CDS

2 records

下载 CDS FASTA

LOC131009250
ATGCCAACCGAGGAAGAAGCAGCAACCTCAATCACCTCAACTCAAAACGACGCCGTCCGAGGCTCCAACCCTCCCGTTCCACCGAAGAAGAAGCGAAACCTCCCCGGGAATCCAGGGTCTGGTGTTTTGACAAAACAAGCAGATCCGGAGGCGGAGGTGATAGCGCTGTCGCCGAAAACCCTAATGGCGACGAACCGGTTCGTGTGCGAGATATGCGGGAAGGGTTTCCAGCGGGAGCAGAACCTGCAGCTGCACAAGAG...

LOC131009250
ATGCCAACCGAGGAAGAAGCAGCAACCTCAATCACCTCAACTCAAAACGACGCCGTCCGAGGCTCCAACCCTCCCGTTCCACCGAAGAAGAAGCGAAACCTCCCCGGGAATCCAGATCCGGAGGCGGAGGTGATAGCGCTGTCGCCGAAAACCCTAATGGCGACGAACCGGTTCGTGTGCGAGATATGCGGGAAGGGTTTCCAGCGGGAGCAGAACCTGCAGCTGCACAAGAGGGGCCACAACCTGCCGTGGAAGCTGAA...

Protein

2 records

下载 Protein FASTA

XP_057792504.1
MPTEEEAATSITSTQNDAVRGSNPPVPPKKKRNLPGNPGSGVLTKQADPEAEVIALSPKTLMATNRFVCEICGKGFQREQNLQLHKRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHASRALGDLTGIKKHFCRKHGEKKWKCDKCAKHYAVHSDWKAHYKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARFTAASHSHTPNHFITSSLGLGQHHFPPNLPLWVAHGNQQSHDHNSIAKHLQEMHHQFTLD...

XP_057792505.1
MPTEEEAATSITSTQNDAVRGSNPPVPPKKKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICGKGFQREQNLQLHKRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHASRALGDLTGIKKHFCRKHGEKKWKCDKCAKHYAVHSDWKAHYKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARFTAASHSHTPNHFITSSLGLGQHHFPPNLPLWVAHGNQQSHDHNSIAKHLQEMHHQFTLDHPLVQNPNP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器