当前解析结果
SmilChr02G005217| 统一新 Gene ID | SmilChr02G005217 |
|---|---|
| 名称 | SmilChr02G005217 |
| 描述 | probable transcription factor GLK1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73380986 - 73384217 / + |
| NCBI Gene ID | LOC131009248 |
|---|---|
| GeneID | 131009248 |
| locus_tag | - |
| NCBI Name | LOC131009248 |
| 原始查询 | SmilChr02G005217 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable transcription factor GLK1 |
| 产物 | probable transcription factor GLK1 |
| Arabidopsis | AT2G20570 (GPRI1)GBF's pro-rich region-interacting factor 1 [Source:NCBI gene (formerly Entrezgene);Acc:816579] identity=48.9; qcov=1.09; evalue=3.02e-95; confidence=high |
| Rice | Os06g0348800 (OsGLK1)- identity=46.5; qcov=1.16; evalue=1.29e-88; confidence=high |
| GO | GO:0000976 (transcription cis-regulatory region binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009248 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792502.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792502.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792502.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792502.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792502.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73381609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,B117,C53,C81,D2 |
Chr2:73381747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,C58 |
Chr2:73381779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,B62 |
Chr2:73381798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C55,C64,C66,D10 |
Chr2:73382192 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:73382205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr2:73382813 |
GC |
G |
1bp_deletion | frameshift_variant | 41 | A20,A22,A5,B108,B109,B114,B115,B117,B124,B125,B126,B127,B129,B135,B14,B17,B24,B25,B29,B30,B33,B52,B58,B62,B63,B66,B75,B78,B83,B88,B9,C20,C48,C6,C61,C63,C76,C77,C78,C84,D2 |
Chr2:73382818 |
GCC |
G |
2bp_deletion | frameshift_variant | 41 | A20,A22,A5,B108,B109,B114,B115,B117,B124,B125,B126,B127,B129,B135,B14,B17,B24,B25,B29,B30,B33,B52,B58,B62,B63,B66,B75,B78,B83,B88,B9,C20,C48,C6,C61,C63,C76,C77,C78,C84,D2 |
Chr2:73382937 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,B89 |
Chr2:73382943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:73382978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:73382980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792502.1PF00249
Myb_DNA-binding 141-191 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792502.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 141 | 191 | 1.1e-08 | 35.8 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。