Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005223`

染色体: Chr02 坐标: 73444491-73453091 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005223`
名称	SmilChr02G005223
描述	26S proteasome non-ATPase regulatory subunit 2 homolog A-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73444491 - 73453091 / `+`

ID 对照

NCBI Gene ID	`LOC131009196`
GeneID	`131009196`
locus_tag	`-`
NCBI Name	`LOC131009196`
原始查询	`SmilChr02G005223`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome non-ATPase regulatory subunit 2 homolog A-like
产物	26S proteasome non-ATPase regulatory subunit 2 homolog A-like
Arabidopsis	`AT2G20580` (RPN1A) 26S proteasome regulatory subunit S2 1A [Source:NCBI gene (formerly Entrezgene);Acc:816580] identity=80; qcov=1; evalue=0; confidence=high
Rice	`Os02g0146700` - identity=76; qcov=1; evalue=0; confidence=high
GO	GO:0000502 (proteasome complex); GO:0005634 (nucleus); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0030234 (enzyme regulator activity); GO:0034515 (proteasome storage granule); GO:0042176 (regulation of protein catabolic process); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01851 (PC_rep); PF17781 (RPN1_RPN2_N); PF18051 (RPN1_C)
InterPro	-
eggNOG	-
NR	GeneID:131009196

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057792431.1`
2	Cytosol	细胞质基质	1.00000	`XP_057792431.1`
3	Nucleus	细胞核	0.60000	`XP_057792431.1`
4	Nucleoplasm	核质	0.60000	`XP_057792431.1`
5	Midbody	Midbody	0.40000	`XP_057792431.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73444729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B113,B129,B135,C54
`Chr2:73446165`	`C`	`CCG`	2bp_insertion	frameshift_variant	8	B122,B23,B28,B91,C54,C67,C83,D2
`Chr2:73448625`	`A`	`AGC`	2bp_insertion	frameshift_variant	138	A1,A10,A16,A2,A20,A22,A23,A24,A3,B100,B101,B103,B106,B107,B110,B113,B114,B117,B118,B120,B123,B126,B128,B129,B13,B131,B133,B134,B135,B136,B137,B138,B139,B140,B15,B19,B21,B22,B23,B24,B25,B26,B27,B29,B3,B31,B32,B33,B34,B36,B4,B40,B42,B43,B44,B47,B48,B5,B51,B53,B57,B58,B59,B6,B60,B61,B62,B63,B65,B66,B67,B68,B69,B72,B73,B74,B75,B78,B8,B82,B84,B86,B87,B9,B91,B93,B94,B96,B97,B98,C1,C11,C13,C15,C16,C17,C20,C21,C22,C26,C29,C34,C35,C37,C38,C39,C4,C40,C44,C45,C47,C48,C49,C5,C52,C53,C55,C56,C58,C64,C65,C66,C69,C7,C71,C72,C73,C79,C81,C82,C83,D1,D10,D2,D3,D4,D6,D7
`Chr2:73448628`	`A`	`ATT`	2bp_insertion	frameshift_variant	92	A10,A11,A14,A16,A2,A21,B100,B101,B103,B106,B107,B113,B120,B121,B123,B128,B129,B13,B137,B139,B140,B16,B18,B2,B22,B23,B24,B27,B28,B36,B4,B40,B46,B48,B49,B5,B54,B58,B59,B65,B68,B69,B73,B74,B82,B86,B87,B90,B91,B92,B94,B96,C11,C14,C15,C17,C18,C2,C22,C26,C29,C3,C31,C33,C34,C36,C37,C43,C45,C46,C49,C5,C51,C52,C53,C54,C55,C58,C60,C64,C65,C66,C69,C7,C73,C79,C80,C82,C85,D1,D10,D7
`Chr2:73448881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:73448894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:73449269`	`A`	`ATC`	2bp_insertion	frameshift_variant	6	B140,B64,B97,C54,C60,C81
`Chr2:73449620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr2:73450053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B122
`Chr2:73450612`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr2:73452062`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr2:73452499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792431.1

895 aa

448

895

RPN1_RPN2_N

PC_rep

RPN1_C

PF17781 RPN1_RPN2_N 52-354 aa PF01851 PC_rep 488-519 aa PF18051 RPN1_C 838-891 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792431.1`	Pfam	`PF17781`	RPN1_RPN2_N	Repeat	52	354	1.4e-125	419.5	RPN1 N-terminal domain
`XP_057792431.1`	Pfam	`PF01851`	PC_rep	Repeat	488	519	2.6e-29	100.8	Proteasome/cyclosome repeat
`XP_057792431.1`	Pfam	`PF18051`	RPN1_C	Domain	838	891	1.3e-31	109.2	26S proteasome non-ATPase regulatory subunit RPN1 C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936448.1
GCTTGGCGAAAAGGAAATCTCTTTATATATCATTCCTAGGTTGTTCAACTCATTTTCCTTTATCTAGGGCTCGAGATTACTGCGTCGATCCACAATTTGTGTTTCTCCGTCGATTTATTGGGAATCATAGTGTTCGATTTTCTACTGGCTTCGTTTGATTCAAGTATTTTGTTCGAGCGCTGCTCAGTTCTAGGGTTTTAGCATCTAGCATTACACATGGCACCTGCGGAACCCAACAGCGGCGGCAGCGCCAGTGCCGG...

CDS

1 records

下载 CDS FASTA

LOC131009196
ATGGCACCTGCGGAACCCAACAGCGGCGGCAGCGCCAGTGCCGGAGCCACCAAAGAGCAGCCGCCGGTCAAGGCGCCGGCAAAGGACTCCAAGAAGAAGGATGAGAAGAAGGACGAAGATCTCTCGGAGGAGGACTTGGCATTGAAGGAACAATTGGAGTTGTACGTAGAGAGAGTACAAGACACAGATCCTGGATTGCAGAAAGTTGCGCTAGAGAGCATGCGGCAAGAAATTCGTACTGCAACCAGTTCTATGACTTC...

Protein

1 records

下载 Protein FASTA

XP_057792431.1
MAPAEPNSGGSASAGATKEQPPVKAPAKDSKKKDEKKDEDLSEEDLALKEQLELYVERVQDTDPGLQKVALESMRQEIRTATSSMTSVPKPLKFLRPHYGTLQAHYEKMSDSDLKKLLADILSVLALTMSPEGKCESLKYRLLGSDGDIGSWGHEYVRNLAGEISQEYSKRQSEDAPIDDLMDLVVQIVAFHMKHNAEPEAVDLLMEVEDLDLLVEHVDSANNKRTCLYLTSSAKYLPGPDDMLVLDIAHSIYMKFEEYP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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