当前解析结果
SmilChr02G005224| 统一新 Gene ID | SmilChr02G005224 |
|---|---|
| 名称 | SmilChr02G005224 |
| 描述 | uncharacterized SmilChr02G005224 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73454030 - 73459418 / + |
| NCBI Gene ID | LOC131009235 |
|---|---|
| GeneID | 131009235 |
| locus_tag | - |
| NCBI Name | LOC131009235 |
| 原始查询 | SmilChr02G005224 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]; symbol=AT4G28450; hit=AT4G28450; species=arabidopsis; confidence=high |
| 产物 | WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]; symbol=AT4G28450; hit=AT4G28450; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G28450 (AT4G28450)WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962] identity=80.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0238900 (OsWD40-11)- identity=73.4; qcov=0.6; evalue=4.07e-154; confidence=medium |
| GO | GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005515 (protein binding); GO:0005730 (nucleolus); GO:0032040 (small-subunit processome) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF04158 (Sof1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009235 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792482.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057792482.1 |
| 3 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.40000 | XP_057792482.1 |
| 4 | Nucleolus rim | Nucleolus rim | 0.40000 | XP_057792482.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792482.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73454497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B26 |
Chr2:73455137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:73455161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr2:73455668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:73455821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:73457475 |
C |
CA |
1bp_insertion | frameshift_variant | 20 | B103,B107,B122,B127,B128,B14,B19,B45,B53,B58,B64,B70,B75,B77,B8,C1,C34,C63,C67,D8 |
Chr2:73457489 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | D1 |
Chr2:73457489 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | D1 |
Chr2:73459106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B64 |
Chr2:73459173 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C82 |
Chr2:73459182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B124,B8,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792482.1PF00400
WD40 59-95 aa
PF00400
WD40 102-137 aa
PF00400
WD40 283-316 aa
PF00400
WD40 334-359 aa
PF04158
Sof1 361-447 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792482.1 |
Pfam | PF00400 |
WD40 | Repeat | 59 | 95 | 9.4e-40 | 134.1 | WD domain, G-beta repeat |
XP_057792482.1 |
Pfam | PF00400 |
WD40 | Repeat | 102 | 137 | 9.4e-40 | 134.1 | WD domain, G-beta repeat |
XP_057792482.1 |
Pfam | PF00400 |
WD40 | Repeat | 283 | 316 | 9.4e-40 | 134.1 | WD domain, G-beta repeat |
XP_057792482.1 |
Pfam | PF00400 |
WD40 | Repeat | 334 | 359 | 9.4e-40 | 134.1 | WD domain, G-beta repeat |
XP_057792482.1 |
Pfam | PF04158 |
Sof1 | Family | 361 | 447 | 1.5e-30 | 106.0 | Sof1-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。