当前解析结果
SmilChr02G005230| 统一新 Gene ID | SmilChr02G005230 |
|---|---|
| 名称 | SmilChr02G005230 |
| 描述 | nicotianamine aminotransferase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73497171 - 73502986 / - |
| NCBI Gene ID | LOC131009243 |
|---|---|
| GeneID | 131009243 |
| locus_tag | - |
| NCBI Name | LOC131009243 |
| 原始查询 | SmilChr02G005230 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nicotianamine aminotransferase 1-like |
| 产物 | nicotianamine aminotransferase 1-like |
| Arabidopsis | AT5G36160 (AT5G36160)Tyrosine transaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833613] identity=56.2; qcov=0.96; evalue=4.12e-172; confidence=high |
| Rice | Os02g0306401 (OsNAAT1)- identity=55.8; qcov=0.993; evalue=9e-170; confidence=high |
| GO | GO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding) |
| KEGG | smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00155 (Aminotran_1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009243 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792498.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057792498.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792498.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792498.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792498.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73499096 |
AAG |
A |
2bp_deletion | frameshift_variant | 7 | B21,B53,B6,B81,C47,C71,D1 |
Chr2:73499219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B64,B69,B95,C57 |
Chr2:73500061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B34 |
Chr2:73500082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B126,C53 |
Chr2:73501013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B41,B64,B69,B95,C57 |
Chr2:73501094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,B126,C53 |
Chr2:73501283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr2:73501311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,B63 |
Chr2:73501373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B107,B6,C63 |
Chr2:73501454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr2:73502663 |
GAA |
G |
2bp_deletion | frameshift_variant | 2 | B16,B63 |
Chr2:73502663 |
GAA |
G |
2bp_deletion | CDS_variant | 2 | B16,B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792498.1PF00155
Aminotran_1_2 39-398 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792498.1 |
Pfam | PF00155 |
Aminotran_1_2 | Domain | 39 | 398 | 9.7e-54 | 183.6 | Aminotransferase class I and II |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。