Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005234`

染色体: Chr02 坐标: 73537900-73540622 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005234`
名称	SmilChr02G005234
描述	probable protein phosphatase 2C 58
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73537900 - 73540622 / `-`

ID 对照

NCBI Gene ID	`LOC131009287`
GeneID	`131009287`
locus_tag	`-`
NCBI Name	`LOC131009287`
原始查询	`SmilChr02G005234`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable protein phosphatase 2C 58
产物	probable protein phosphatase 2C 58
Arabidopsis	`AT4G28400` (AT4G28400) Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:828957] identity=75.3; qcov=1; evalue=3.88e-138; confidence=high
Rice	`Os07g0507000` (OsPP2C62) - identity=69; qcov=1.01; evalue=2.84e-123; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006470 (protein dephosphorylation)
KEGG	-
Pfam	PF00481 (PP2C)
InterPro	-
eggNOG	-
NR	GeneID:131009287

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792564.1`
2	Cytoplasm	细胞质	0.80000	`XP_057792565.1`
3	Nucleus	细胞核	0.60000	`XP_057792565.1`
4	Chromosome	染色体	0.00000	`XP_057792564.1`
5	Centromere	着丝粒	0.00000	`XP_057792564.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73538191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:73538220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:73538344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:73538419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:73538467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,C39
`Chr2:73538590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,C60,D7
`Chr2:73538629`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B13
`Chr2:73538629`	`GC`	`G`	1bp_deletion	CDS_variant	1	B13
`Chr2:73538679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,C30,C35
`Chr2:73538758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A10,B139
`Chr2:73538918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B13,B61
`Chr2:73538993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,B64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792564.1

284 aa

142

284

PP2C

PF00481 PP2C 45-276 aa

XP_057792565.1

243 aa

122

243

PP2C

PF00481 PP2C 5-235 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792564.1`	Pfam	`PF00481`	PP2C	Family	45	276	2.7e-60	204.9	Protein phosphatase 2C
`XP_057792565.1`	Pfam	`PF00481`	PP2C	Family	5	235	2e-60	205.3	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936581.1
CAAAACTGTTGATAAATATCTTCGTAGATAAGTGAAAAACAGGTAAGAGTAATAAATAAATTCATGATCGGGGCATGAAAAAAAATTCAATCTTTTTGTGTATCTCTAAATAATTGAGTTCCATCTTTTTCTGGGTTCCCAGAGTTTCAGAATAGTGTCCAAAATTCAAGATTTTTTTGGAGAAAGAGACAGCCATGATAGGAAGAGAAATCCTCAACAAGATGAAGGAAAAAGCATGCTTTTCCACTCCTCTCACACCG...

XM_057936582.1
AAAACTGCCCAATAGTTCGTTTTCGAGTTCTTGATTTTGGAGTCAACTTTCTATTTCCAGAAAAAGCATGCTTTTCCACTCCTCTCACACCGGATGCAAAGAAAGGCGGGAGCAAATTCTCAAAGCACGTCACACACGGTTCCCATCTAATGAAAGGAAAGGCGAACCATGCCATGGAAGATTATTTAGTTTCTGAACTCAAGATGATAGACGAGAACGAGCTGGGTCTGTTTGCTATCTATGACGGGCATATGGGCCAC...

CDS

2 records

下载 CDS FASTA

LOC131009287
ATGATAGGAAGAGAAATCCTCAACAAGATGAAGGAAAAAGCATGCTTTTCCACTCCTCTCACACCGGATGCAAAGAAAGGCGGGAGCAAATTCTCAAAGCACGTCACACACGGTTCCCATCTAATGAAAGGAAAGGCGAACCATGCCATGGAAGATTATTTAGTTTCTGAACTCAAGATGATAGACGAGAACGAGCTGGGTCTGTTTGCTATCTATGACGGGCATATGGGCCACGATGTTGCAAATTACTTGCAACTGCA...

LOC131009287
ATGAAAGGAAAGGCGAACCATGCCATGGAAGATTATTTAGTTTCTGAACTCAAGATGATAGACGAGAACGAGCTGGGTCTGTTTGCTATCTATGACGGGCATATGGGCCACGATGTTGCAAATTACTTGCAACTGCACCTGTTCAACAACATCTTGAAGCAGAGCGATTTTTGGACGGACATAAAAATTGCACTAAAGAACGCCTATCAGAAGACCGATAAGGAAATACTAGAGAAATCGCTTCAGTTGGGGAAAGGAGG...

Protein

2 records

下载 Protein FASTA

XP_057792564.1
MIGREILNKMKEKACFSTPLTPDAKKGGSKFSKHVTHGSHLMKGKANHAMEDYLVSELKMIDENELGLFAIYDGHMGHDVANYLQLHLFNNILKQSDFWTDIKIALKNAYQKTDKEILEKSLQLGKGGSTAVTAILINGQKLIVANVGDSRAVISKKGVANQLSVDHEPSREKKLIESKGGFVSNLPGDVPRVDGQLAVARAFGDKSLKRHVSSEPDIAVETIDDDAEFVILASDGLWKVMSNQEAVDSIKTIKDPHAAA...

XP_057792565.1
MKGKANHAMEDYLVSELKMIDENELGLFAIYDGHMGHDVANYLQLHLFNNILKQSDFWTDIKIALKNAYQKTDKEILEKSLQLGKGGSTAVTAILINGQKLIVANVGDSRAVISKKGVANQLSVDHEPSREKKLIESKGGFVSNLPGDVPRVDGQLAVARAFGDKSLKRHVSSEPDIAVETIDDDAEFVILASDGLWKVMSNQEAVDSIKTIKDPHAAAKHLIDEALSRKSKDDISCIVVRFQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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