Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005249`

染色体: Chr02 坐标: 73641293-73644615 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005249`
名称	SmilChr02G005249
描述	wax ester synthase/diacylglycerol acyltransferase 4-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73641293 - 73644615 / `+`

ID 对照

NCBI Gene ID	`LOC131009226`
GeneID	`131009226`
locus_tag	`-`
NCBI Name	`LOC131009226`
原始查询	`SmilChr02G005249`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	wax ester synthase/diacylglycerol acyltransferase 4-like
产物	wax ester synthase/diacylglycerol acyltransferase 4-like
Arabidopsis	`AT5G53390` (FOP1) O-acyltransferase (WSD1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:835420] identity=28.2; qcov=1.02; evalue=4.69e-55; confidence=low
Rice	`Os01g0681000` - identity=30.7; qcov=1.04; evalue=1.19e-62; confidence=low
GO	GO:0004144 (diacylglycerol O-acyltransferase activity); GO:0005886 (plasma membrane); GO:0019432 (triglyceride biosynthetic process); GO:0047196 (long-chain-alcohol O-fatty-acyltransferase activity)
KEGG	-
Pfam	PF03007 (WS_DGAT_cat); PF06974 (WS_DGAT_C)
InterPro	-
eggNOG	-
NR	GeneID:131009226

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057792473.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057792473.1`
3	Nucleus	细胞核	0.00000	`XP_057792473.1`
4	Chromosome	染色体	0.00000	`XP_057792473.1`
5	Centromere	着丝粒	0.00000	`XP_057792473.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73641537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B40,B68
`Chr2:73641545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B139,B40,B68
`Chr2:73641550`	`GCA`	`G`	2bp_deletion	frameshift_variant	3	B139,B40,B68
`Chr2:73641550`	`GCA`	`G`	2bp_deletion	CDS_variant	3	B139,B40,B68
`Chr2:73641553`	`T`	`TGA`	2bp_insertion	stop_gained,frameshift_variant	3	B139,B40,B68
`Chr2:73641553`	`T`	`TGA`	2bp_insertion	CDS_variant	3	B139,B40,B68
`Chr2:73641782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:73641847`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:73642057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B124,B52
`Chr2:73642078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B6,C63,D7
`Chr2:73642105`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C17
`Chr2:73642105`	`AC`	`A`	1bp_deletion	CDS_variant	1	C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792473.1

464 aa

232

464

WS_DGAT_cat

WS_DGAT_C

PF03007 WS_DGAT_cat 68-259 aa PF06974 WS_DGAT_C 312-457 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792473.1`	Pfam	`PF03007`	WS_DGAT_cat	Domain	68	259	4.3e-13	50.4	Wax ester synthase/diacylglycerol acyltransferase catalytic domain
`XP_057792473.1`	Pfam	`PF06974`	WS_DGAT_C	Domain	312	457	7.2e-37	127.4	WS/DGAT C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936490.1
CATTTTATACAAACGTGTGTACAATCGCTTATAACAACTACACTAATTTAATATAGAATTTTCCCATATAAAATTCATTGCAATAAATAAACTACATATTAAATACTAATTAATTATTTAGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATAAGTATATATATGAGGCAAAGAAGGAAGAAGAGTTGTAGATTATGGAGGGTGAAAAAGAAGTGTTGGAGCCTATGAGCCCAAGTGCTCAATACTTGAAGAGCTCTGCA...

CDS

1 records

下载 CDS FASTA

LOC131009226
ATGGAGGGTGAAAAAGAAGTGTTGGAGCCTATGAGCCCAAGTGCTCAATACTTGAAGAGCTCTGCATTATCACTCACAATCTTGGGAGTTTTGGAAATGGAAGAAGACATTGATGATTCCAAGACTATGTCTCTCCTCAAAGATCTCTTCTTGCCTATAAACCCTCGTTTCACCTCGATTATGGTTACCGATAAGAAAGGGGCGAGGAAATGGAAAAAAGTAGAGGTGAATCTCGAAGACCACGTCAACGTCCCGACATT...

Protein

1 records

下载 Protein FASTA

XP_057792473.1
MEGEKEVLEPMSPSAQYLKSSALSLTILGVLEMEEDIDDSKTMSLLKDLFLPINPRFTSIMVTDKKGARKWKKVEVNLEDHVNVPTFPSGMSVDYYDECFNDYLSKLATEQFPQDRPLWEIHILKYPTKNAAGNIIFKLHHSLGDGYSLMGALLSCLQRVDDPSLPLTFPSLQSSTGSGARRSSFLRRIPRVFTGLVHTAYDFGWSLLKSTSMKDDKSPIRSGVDGVEFRPIATTTTSFSIDQLKQIKSKLNVTINDVIT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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