当前解析结果
SmilChr02G005257| 统一新 Gene ID | SmilChr02G005257 |
|---|---|
| 名称 | SmilChr02G005257 |
| 描述 | flavonoid-6-hydroxylase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73671042 - 73673332 / - |
| NCBI Gene ID | LOC131009234 |
|---|---|
| GeneID | 131009234 |
| locus_tag | - |
| NCBI Name | LOC131009234 |
| 原始查询 | SmilChr02G005257 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | flavonoid-6-hydroxylase-like |
| 产物 | flavonoid-6-hydroxylase-like |
| Arabidopsis | AT4G31940 (CYP82C4)cytochrome P450, family 82, subfamily C, polypeptide 4 [Source:NCBI gene (formerly Entrezgene);Acc:829324] identity=46.5; qcov=1; evalue=5.42e-167; confidence=high |
| Rice | Os10g0317900 (CYP75B4)- identity=35.6; qcov=0.912; evalue=3.72e-96; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009234 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792481.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057792481.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792481.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792481.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792481.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73671377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B88,C71,C82 |
Chr2:73671388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:73671409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B18,B57,B75,C17,C72 |
Chr2:73671427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B26,B48,B5,B73,B97 |
Chr2:73671433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C85 |
Chr2:73671439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B138,B31,B69,C30,C35 |
Chr2:73671475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C47,D10 |
Chr2:73671478 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A15,B77,C9 |
Chr2:73671478 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A15,B77,C9 |
Chr2:73671530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,A20 |
Chr2:73671585 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B45,C12 |
Chr2:73671597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B45,C12,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792481.1PF00067
p450 45-499 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792481.1 |
Pfam | PF00067 |
p450 | Domain | 45 | 499 | 9.5e-82 | 275.9 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。