Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005259`

染色体: Chr02 坐标: 73682759-73685301 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005259`
名称	SmilChr02G005259
描述	uncharacterized SmilChr02G005259
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73682759 - 73685301 / `+`

ID 对照

NCBI Gene ID	`LOC131009219`
GeneID	`131009219`
locus_tag	`-`
NCBI Name	`LOC131009219`
原始查询	`SmilChr02G005259`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908]; symbol=NMD3; hit=AT2G03820; species=arabidopsis; confidence=high
产物	nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908]; symbol=NMD3; hit=AT2G03820; species=arabidopsis; confidence=high
Arabidopsis	`AT2G03820` (NMD3) nonsense-mediated mRNA decay NMD3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:814908] identity=67.5; qcov=0.973; evalue=0; confidence=high
Rice	`Os10g0573900` (OsNMD3) - identity=54.8; qcov=0.971; evalue=0; confidence=high
GO	GO:0000055 (ribosomal large subunit export from nucleus); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0043023 (ribosomal large subunit binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)); smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF04981 (NMD3); PF21192 (OB_NMD3); PF21193 (NMD_SH3); PF29994 (NMD3_N)
InterPro	-
eggNOG	-
NR	GeneID:131009219

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792458.1`
2	Nucleolus	核仁	0.40000	`XP_057792458.1`
3	Cytoplasm	细胞质	0.40000	`XP_057792458.1`
4	Chromosome	染色体	0.00000	`XP_057792458.1`
5	Centromere	着丝粒	0.00000	`XP_057792458.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73683671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:73683806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B139,B74
`Chr2:73683878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B90,B92,C55
`Chr2:73683929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:73684136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,B100
`Chr2:73684337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr2:73684349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B36,C32,C68,D8
`Chr2:73684416`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B136
`Chr2:73684416`	`AT`	`A`	1bp_deletion	CDS_variant	1	B136
`Chr2:73684440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:73684481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:73684595`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B100,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792458.1

515 aa

258

515

NMD3_N

NMD3

NMD_SH3

OB_NMD3

PF29994 NMD3_N 19-149 aa PF04981 NMD3 154-248 aa PF21193 NMD_SH3 251-292 aa PF21192 OB_NMD3 314-404 aa

XP_057792461.1

515 aa

258

515

NMD3_N

NMD3

NMD_SH3

OB_NMD3

PF29994 NMD3_N 19-149 aa PF04981 NMD3 154-248 aa PF21193 NMD_SH3 251-292 aa PF21192 OB_NMD3 314-404 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792458.1`	Pfam	`PF29994`	NMD3_N	Domain	19	149	1.6e-35	123.3	NMD3, N-terminal domain
`XP_057792458.1`	Pfam	`PF04981`	NMD3	Domain	154	248	5.1e-31	107.8	NMD3, second domain
`XP_057792458.1`	Pfam	`PF21193`	NMD_SH3	Domain	251	292	2.1e-14	54.1	NMD3 SH3 domain
`XP_057792458.1`	Pfam	`PF21192`	OB_NMD3	Domain	314	404	4.4e-31	107.8	NMD3 OB-fold domain
`XP_057792461.1`	Pfam	`PF29994`	NMD3_N	Domain	19	149	1.6e-35	123.3	NMD3, N-terminal domain
`XP_057792461.1`	Pfam	`PF04981`	NMD3	Domain	154	248	5.1e-31	107.8	NMD3, second domain
`XP_057792461.1`	Pfam	`PF21193`	NMD_SH3	Domain	251	292	2.1e-14	54.1	NMD3 SH3 domain
`XP_057792461.1`	Pfam	`PF21192`	OB_NMD3	Domain	314	404	4.4e-31	107.8	NMD3 OB-fold domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936475.1
TAAATAGAAAGAAAAAAGAAATAGAGTGCAATTTATTGTCAGCTTAACCGACTCCGGCTGTGATAAAACCTCCCTCTTCCAATTTTTGATTTTCTGCTCCAAATTTCACACGGCTGCCATTTACAACTGTACGCCGCCGCTGCAAATTTCTGTTTTTCAGTAGCTATGGAGCAAGACACGGGGATGTTTACTGTTTCCCAGACGATTGGCAGCGTGCTATGCTGCAAATGTGGTATCTCGATGCAACCAAACGCTGCAAA...

XM_057936478.1
TAAATAGAAAGAAAAAAGAAATAGAGTGCAATTTATTGTCAGCTTAACCGACTCCGGCTGTGATAAAACCTCCCTCTTCCAATTTTTGATTTTCTGCTCCAAATTTCACACGGCTGCCATTTACAACTGTACGCCGCCGCTGCAAATTTCTGTTTTTCAGCTATGGAGCAAGACACGGGGATGTTTACTGTTTCCCAGACGATTGGCAGCGTGCTATGCTGCAAATGTGGTATCTCGATGCAACCAAACGCTGCAAATAT...

CDS

2 records

下载 CDS FASTA

LOC131009219
ATGGAGCAAGACACGGGGATGTTTACTGTTTCCCAGACGATTGGCAGCGTGCTATGCTGCAAATGTGGTATCTCGATGCAACCAAACGCTGCAAATATGTGTACAAGATGCCTACAATCTGAAATCGACATAACTGAAGGGCTTCAAAAGCAAGTCACCATCGTCCATTGTCCTGAATGCGATAAATATCTGCAGCCCCCGAAGACGTGGACGAGAGCGCAGCTGGAGTCGAGGAAGCTCCTCTCGTTCTGCATTAGAAG...

Protein

2 records

下载 Protein FASTA

XP_057792458.1
MEQDTGMFTVSQTIGSVLCCKCGISMQPNAANMCTRCLQSEIDITEGLQKQVTIVHCPECDKYLQPPKTWTRAQLESRKLLSFCIRRLKNLNKVRLVNAEFVWTEPHSKRIKVKLKVQKEVLNGAVLEQSYTVEYVVQDQMCESCSRAQANPNQWVAVVQLRQHVSHRRTFFYLEQLILKQDAAKSAIRVSQMDQGIDFFFNNRSHALKFVEFLGKYVPIRTRSDKQLVSHDQKSNSYNYNYTFSVEISPICREDLICLP...

XP_057792461.1
MEQDTGMFTVSQTIGSVLCCKCGISMQPNAANMCTRCLQSEIDITEGLQKQVTIVHCPECDKYLQPPKTWTRAQLESRKLLSFCIRRLKNLNKVRLVNAEFVWTEPHSKRIKVKLKVQKEVLNGAVLEQSYTVEYVVQDQMCESCSRAQANPNQWVAVVQLRQHVSHRRTFFYLEQLILKQDAAKSAIRVSQMDQGIDFFFNNRSHALKFVEFLGKYVPIRTRSDKQLVSHDQKSNSYNYNYTFSVEISPICREDLICLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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