当前解析结果
SmilChr02G005261| 统一新 Gene ID | SmilChr02G005261 |
|---|---|
| 名称 | SmilChr02G005261 |
| 描述 | transcription factor bHLH162-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73698250 - 73699763 / - |
| NCBI Gene ID | LOC131009294 |
|---|---|
| GeneID | 131009294 |
| locus_tag | - |
| NCBI Name | LOC131009294 |
| 原始查询 | SmilChr02G005261 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor bHLH162-like |
| 产物 | transcription factor bHLH162-like |
| Arabidopsis | AT4G20970 (AT4G20970)basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827844] identity=31.7; qcov=0.667; evalue=1.21e-16; confidence=low |
| Rice | Os01g0108600 (P0482C06.23-1)- identity=25; qcov=0.797; evalue=2.22e-10; confidence=low |
| GO | GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity); GO:0090575 (RNA polymerase II transcription regulator complex) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009294 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792573.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792573.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792573.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792573.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792573.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73698500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B118,B26 |
Chr2:73698826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,C13 |
Chr2:73698861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B40 |
Chr2:73698911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:73698958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B75 |
Chr2:73699006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C53,C57 |
Chr2:73699546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:73699649 |
A |
ATT |
2bp_insertion | frameshift_variant | 58 | A11,A13,A18,A24,A25,A4,A5,A9,B1,B111,B12,B121,B126,B128,B13,B132,B136,B138,B16,B17,B20,B33,B34,B36,B37,B39,B45,B49,B60,B68,B71,B78,B8,B81,B85,B89,B90,C1,C11,C14,C18,C3,C40,C43,C47,C5,C59,C62,C67,C69,C73,C74,C78,C8,D1,D10,D3,D5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。