Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005262`

染色体: Chr02 坐标: 73711521-73713638 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005262`
名称	SmilChr02G005262
描述	uncharacterized SmilChr02G005262
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73711521 - 73713638 / `-`

ID 对照

NCBI Gene ID	`LOC131009285`
GeneID	`131009285`
locus_tag	`-`
NCBI Name	`LOC131009285`
原始查询	`SmilChr02G005262`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sugar phosphate exchanger, putative (DUF506) [Source:NCBI gene (formerly Entrezgene);Acc:829383]; symbol=AT4G32480; hit=AT4G32480; species=arabidopsis; confidence=medium
产物	sugar phosphate exchanger, putative (DUF506) [Source:NCBI gene (formerly Entrezgene);Acc:829383]; symbol=AT4G32480; hit=AT4G32480; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G32480` (AT4G32480) sugar phosphate exchanger, putative (DUF506) [Source:NCBI gene (formerly Entrezgene);Acc:829383] identity=44.5; qcov=1; evalue=2.56e-76; confidence=medium
Rice	`Os05g0519300` - identity=34.7; qcov=0.979; evalue=4.47e-41; confidence=low
GO	-
KEGG	-
Pfam	PF04720 (PDDEXK_6)
InterPro	-
eggNOG	-
NR	GeneID:131009285

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792562.1`
2	Cytoplasm	细胞质	0.40000	`XP_057792562.1`
3	Cytosol	细胞质基质	0.20000	`XP_057792562.1`
4	Chromosome	染色体	0.00000	`XP_057792562.1`
5	Centromere	着丝粒	0.00000	`XP_057792562.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73711768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:73711769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:73711771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,C53
`Chr2:73711805`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B66,B70,C48,D2
`Chr2:73711818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr2:73711826`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:73711866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B125,C73
`Chr2:73711868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:73711878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B124,B21,B9,C41
`Chr2:73711892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:73711936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr2:73712983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792562.1

291 aa

146

291

PDDEXK_6

PF04720 PDDEXK_6 21-248 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792562.1`	Pfam	`PF04720`	PDDEXK_6	Family	21	248	2.2e-63	214.9	PDDEXK-like family of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936579.1
GTGGTTGGACACATCAAATATTCACAATTTAACATAGACTACATGACCTAAAACAAAGTAGCCTACCATGGATGAAGTAGCCATGATCAATCAAGAAAAATTCAGACACCCATACCATGATCTTGATGACATGGTTTTCTGGTTCCACGATGAAGAAGAAGTTCTAGAAAGTTCGCAAAAATCGAGAACATTCATCGATGAAGAAGAAGAAGATAAAAAAGAAAATGAAGAGAATAACAATAGTGAAGAGCGAAAAGCAT...

CDS

1 records

下载 CDS FASTA

LOC131009285
ATGGATGAAGTAGCCATGATCAATCAAGAAAAATTCAGACACCCATACCATGATCTTGATGACATGGTTTTCTGGTTCCACGATGAAGAAGAAGTTCTAGAAAGTTCGCAAAAATCGAGAACATTCATCGATGAAGAAGAAGAAGATAAAAAAGAAAATGAAGAGAATAACAATAGTGAAGAGCGAAAAGCATTTTGGGAGTTGCAAGAGGAACTTCTCCAAACAACCTTGTATAGGACCACTAGCTTCGAGGCTAGGGT...

Protein

1 records

下载 Protein FASTA

XP_057792562.1
MDEVAMINQEKFRHPYHDLDDMVFWFHDEEEVLESSQKSRTFIDEEEEDKKENEENNNSEERKAFWELQEELLQTTLYRTTSFEARVRKAAKDAITKLNSAAGHGCSCRKTAAAVSCARCGLKEMSTLLQNDGFDCVVCVSKWKSSSQIPAAGQHTYLEVVESGGSKKGDMRVIIELNFRAEFEMAKSSQEYKKLVAKLPELFVGKIERLRNLVKILCGACKKFMEERKMYVAPWRKHKYMQAKWRGKPLLPPPVAVVAP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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