当前解析结果
SmilChr02G005267| 统一新 Gene ID | SmilChr02G005267 |
|---|---|
| 名称 | SmilChr02G005267 |
| 描述 | uncharacterized SmilChr02G005267 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73752593 - 73754942 / - |
| NCBI Gene ID | LOC131009273 |
|---|---|
| GeneID | 131009273 |
| locus_tag | - |
| NCBI Name | LOC131009273 |
| 原始查询 | SmilChr02G005267 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os10g0498300; species=rice; confidence=high |
| 产物 | hit=Os10g0498300; species=rice; confidence=high |
| Arabidopsis | AT4G02340 (AT4G02340)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828063] identity=37.4; qcov=0.961; evalue=4.88e-68; confidence=medium |
| Rice | Os10g0498300- identity=54; qcov=0.898; evalue=1.59e-120; confidence=high |
| GO | GO:0016787 (hydrolase activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009273 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792542.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057792542.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057792542.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792542.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792542.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73752771 |
G |
GAA |
2bp_insertion | frameshift_variant | 47 | A1,A2,A20,A23,A25,A4,B101,B109,B11,B115,B119,B12,B120,B124,B125,B136,B14,B16,B25,B3,B33,B42,B43,B44,B45,B52,B55,B59,B6,B68,B7,B70,B71,B88,B94,C23,C27,C29,C38,C39,C40,C59,C6,C61,C63,C78,D3 |
Chr2:73752798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C41 |
Chr2:73752945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B28,C85,D10 |
Chr2:73752976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:73753234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B21,C47,C57 |
Chr2:73753267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr2:73753276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:73753291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B46,C67,C87,D4 |
Chr2:73753550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C86,D6 |
Chr2:73754369 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr2:73754410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B31,C55,C86,D6 |
Chr2:73754769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792542.1PF00561
Abhydrolase_1 45-314 aa
PF12146
Hydrolase_4 46-150 aa
PF12697
Abhydrolase_6 47-320 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792542.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 45 | 314 | 7e-30 | 105.2 | alpha/beta hydrolase fold |
XP_057792542.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 46 | 150 | 1.5e-10 | 41.6 | Serine aminopeptidase, S33 |
XP_057792542.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 47 | 320 | 2.8e-18 | 68.0 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。