当前解析结果
SmilChr02G005272| 统一新 Gene ID | SmilChr02G005272 |
|---|---|
| 名称 | SmilChr02G005272 |
| 描述 | beta-glucuronosyltransferase GlcAT14A-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73807139 - 73810785 / + |
| NCBI Gene ID | LOC131009239 |
|---|---|
| GeneID | 131009239 |
| locus_tag | - |
| NCBI Name | LOC131009239 |
| 原始查询 | SmilChr02G005272 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-glucuronosyltransferase GlcAT14A-like |
| 产物 | beta-glucuronosyltransferase GlcAT14A-like |
| Arabidopsis | AT4G03340 (AT4G03340)Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827969] identity=80.5; qcov=0.972; evalue=0; confidence=high |
| Rice | Os08g0143500 (P0473D02.40-1)- identity=70.1; qcov=1; evalue=0; confidence=high |
| GO | GO:0015020 (glucuronosyltransferase activity); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF02485 (Branch) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009239 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057792487.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057792487.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792491.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792491.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792491.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73808093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B89,C78 |
Chr2:73808195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,C85 |
Chr2:73808327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,B65 |
Chr2:73808333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr2:73808439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:73809765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B104,B44,B6,B98,C63 |
Chr2:73809966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,C26 |
Chr2:73810093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr2:73810120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr2:73810254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr2:73810357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C30,C35 |
Chr2:73810385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792487.1PF02485
Branch 89-348 aa
XP_057792488.1PF02485
Branch 89-348 aa
XP_057792489.1PF02485
Branch 89-348 aa
XP_057792490.1PF02485
Branch 89-348 aa
XP_057792491.1PF02485
Branch 11-270 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792487.1 |
Pfam | PF02485 |
Branch | Family | 89 | 348 | 2.2e-80 | 270.5 | Core-2/I-Branching enzyme |
XP_057792488.1 |
Pfam | PF02485 |
Branch | Family | 89 | 348 | 2.2e-80 | 270.5 | Core-2/I-Branching enzyme |
XP_057792489.1 |
Pfam | PF02485 |
Branch | Family | 89 | 348 | 2.2e-80 | 270.5 | Core-2/I-Branching enzyme |
XP_057792490.1 |
Pfam | PF02485 |
Branch | Family | 89 | 348 | 2.2e-80 | 270.5 | Core-2/I-Branching enzyme |
XP_057792491.1 |
Pfam | PF02485 |
Branch | Family | 11 | 270 | 1.3e-80 | 271.3 | Core-2/I-Branching enzyme |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。