Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005275`

染色体: Chr02 坐标: 73819579-73823335 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005275`
名称	SmilChr02G005275
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73819579 - 73823335 / `+`

ID 对照

NCBI Gene ID	`LOC131009256`
GeneID	`131009256`
locus_tag	`-`
NCBI Name	`LOC131009256`
原始查询	`SmilChr02G005275`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=28.5; qcov=1.05; evalue=3.64e-26; confidence=low
Rice	`Os09g0449600` (OsFbox490) - identity=25.3; qcov=0.806; evalue=1.11e-18; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3)
InterPro	-
eggNOG	-
NR	GeneID:131009256

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057792516.1`
2	Nucleus	细胞核	0.80000	`XP_057792516.1`
3	Cytosol	细胞质基质	0.20000	`XP_057792516.1`
4	Chromosome	染色体	0.00000	`XP_057792516.1`
5	Centromere	着丝粒	0.00000	`XP_057792516.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73821939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr2:73822067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,C35
`Chr2:73822170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:73822298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B8,C43
`Chr2:73822345`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr2:73822370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C49,C72
`Chr2:73822389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B38,B53,B55
`Chr2:73822396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B38,B53,B55,B88
`Chr2:73822424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:73822470`	`C`	`T`	EMS_canonical_SNV	stop_gained	23	B11,B125,B133,B17,B19,B2,B25,B30,B38,B53,B55,B59,B7,B88,C18,C2,C36,C56,C58,C59,C60,C62,C81
`Chr2:73822523`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B7,C15
`Chr2:73822545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B25,C2,C58,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792516.1

387 aa

194

387

F-box

FBA_3

FBA_1

PF00646 F-box 5-42 aa PF08268 FBA_3 83-301 aa PF07734 FBA_1 100-308 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792516.1`	Pfam	`PF00646`	F-box	Domain	5	42	1.1e-09	38.4	F-box domain
`XP_057792516.1`	Pfam	`PF08268`	FBA_3	Repeat	83	301	3.2e-18	66.5	F-box associated beta propeller domain
`XP_057792516.1`	Pfam	`PF07734`	FBA_1	Repeat	100	308	4.4e-22	79.2	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936533.1
ATGAAATAAAAATTTTATTGAGAAAAGCGAACCAACAAAAAACGAAAACATAAACCCTTGGGAGAGGGGCCGGGCCTCATTACAAACTCAACAAGAGGAAAAAGAGTACCCGTCGAAGAAGCGGGAAGGAGAAGGTGAGTGTAAAGTTAGCTTAACTTGACGAGAATAGCGACAAAAAGAAGGAGGTGATAGTTTTGCCTATTGGCTGGGATCTTTTTACAAGCATGTGGAGTGCGCGGCTGTTTCTGCTTTGTCTCTTT...

CDS

1 records

下载 CDS FASTA

LOC131009256
ATGTCGGACTATTTTCCGGCGGATCTCTGGATCGAAATCCTCATCAAATTGCCGGTCAAATCCCTAATTCGCTTCACCGCCGTCTCCAAATCGTGGAGATCCCTCATCACAAGCCCCAATTTCAACTCCGTACACCTCTCCAATGCCAAAAATCGCGCCCTCCTCCGCCGCTACGACAAGCACGACAAGCACGAGCACTATCATCTGCTCGAATTCGCCGCTAAAAACGGAGCCTTCGGCATCAATTCCTGCTCGGAGTT...

Protein

1 records

下载 Protein FASTA

XP_057792516.1
MSDYFPADLWIEILIKLPVKSLIRFTAVSKSWRSLITSPNFNSVHLSNAKNRALLRRYDKHDKHEHYHLLEFAAKNGAFGINSCSEFEFPLKSQIGYFRIVGSCDGLVCLTDDFFLYPSQPVILWNPSVRNRVILPQAITNPKGPHIVVLGFGVANGVYKVVRLVYCRKPDDYGFGVPPQAEIFSLGAGRWRKVWGFDIKLRILEFMWCQVLLNGVVHWLGYEPIDDDHSSRSSILAFEIDNEVFGEVMLPDLLAKEAVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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