当前解析结果
SmilChr02G005285| 统一新 Gene ID | SmilChr02G005285 |
|---|---|
| 名称 | SmilChr02G005285 |
| 描述 | pentatricopeptide repeat-containing protein At5g66520-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73883321 - 73885091 / - |
| NCBI Gene ID | LOC131009246 |
|---|---|
| GeneID | 131009246 |
| locus_tag | - |
| NCBI Name | LOC131009246 |
| 原始查询 | SmilChr02G005285 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At5g66520-like |
| 产物 | pentatricopeptide repeat-containing protein At5g66520-like |
| Arabidopsis | AT5G66520 (AT5G66520)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836784] identity=39.2; qcov=0.922; evalue=4.53e-87; confidence=medium |
| Rice | Os01g0800400- identity=39.2; qcov=0.981; evalue=5.14e-84; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009246 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057792500.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792500.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792500.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792500.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792500.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73883486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C21,C27 |
Chr2:73883518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B118,B136,B8,D11 |
Chr2:73883527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B100,B50 |
Chr2:73883561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C61 |
Chr2:73883611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr2:73883743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:73883751 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B47 |
Chr2:73883751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr2:73883756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,C82 |
Chr2:73883792 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C81 |
Chr2:73883792 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C81 |
Chr2:73883821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792500.1PF01535
PPR 112-138 aa
PF01535
PPR 144-169 aa
PF01535
PPR 221-247 aa
PF13041
PPR_2 245-293 aa
PF13812
PPR_3 245-293 aa
PF01535
PPR 248-278 aa
PF01535
PPR 283-305 aa
PF01535
PPR 316-339 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792500.1 |
Pfam | PF01535 |
PPR | Repeat | 112 | 138 | 7.3e-40 | 133.2 | PPR repeat |
XP_057792500.1 |
Pfam | PF01535 |
PPR | Repeat | 144 | 169 | 7.3e-40 | 133.2 | PPR repeat |
XP_057792500.1 |
Pfam | PF01535 |
PPR | Repeat | 221 | 247 | 7.3e-40 | 133.2 | PPR repeat |
XP_057792500.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 245 | 293 | 1.7e-36 | 124.8 | PPR repeat family |
XP_057792500.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 245 | 293 | 9.9e-14 | 51.9 | Pentatricopeptide repeat domain |
XP_057792500.1 |
Pfam | PF01535 |
PPR | Repeat | 248 | 278 | 7.3e-40 | 133.2 | PPR repeat |
XP_057792500.1 |
Pfam | PF01535 |
PPR | Repeat | 283 | 305 | 7.3e-40 | 133.2 | PPR repeat |
XP_057792500.1 |
Pfam | PF01535 |
PPR | Repeat | 316 | 339 | 7.3e-40 | 133.2 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。