当前解析结果
SmilChr02G005300| 统一新 Gene ID | SmilChr02G005300 |
|---|---|
| 名称 | SmilChr02G005300 |
| 描述 | pentatricopeptide repeat-containing protein At4g02750-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73951277 - 73953821 / - |
| NCBI Gene ID | LOC131009980 |
|---|---|
| GeneID | 131009980 |
| locus_tag | - |
| NCBI Name | LOC131009980 |
| 原始查询 | SmilChr02G005300 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At4g02750-like |
| 产物 | pentatricopeptide repeat-containing protein At4g02750-like |
| Arabidopsis | AT4G02750 (AT4G02750)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828187] identity=41.3; qcov=0.716; evalue=7.18e-44; confidence=medium |
| Rice | Os09g0327200 (P0706E03.7)- identity=41.8; qcov=0.716; evalue=1.41e-45; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF12854 (PPR_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009980 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.40000 | XP_057793357.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057793357.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057793357.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793357.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793357.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73951314 |
TC |
T |
1bp_deletion | frameshift_variant | 15 | A11,A13,B135,B136,B24,B34,B59,B60,B69,C1,C12,C20,C25,C31,C86 |
Chr2:73951344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B34 |
Chr2:73951359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:73952393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,B94 |
Chr2:73952396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,B94 |
Chr2:73952462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:73952465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C79 |
Chr2:73952480 |
ACC |
A |
2bp_deletion | frameshift_variant | 36 | A1,A19,A20,B102,B103,B117,B123,B14,B16,B18,B25,B37,B38,B39,B52,B53,B63,B64,B73,B74,B83,B84,B92,C16,C19,C23,C3,C37,C41,C45,C50,C61,C63,C67,C81,D4 |
Chr2:73952488 |
CA |
C |
1bp_deletion | frameshift_variant | 73 | A1,A13,A14,A19,A20,A6,B101,B103,B106,B108,B11,B117,B118,B12,B121,B123,B127,B137,B139,B14,B16,B18,B20,B25,B29,B37,B38,B39,B44,B46,B51,B52,B53,B56,B57,B58,B61,B62,B63,B64,B73,B74,B8,B80,B81,B83,B84,B92,B93,B94,B96,C10,C13,C16,C19,C20,C23,C3,C34,C37,C41,C45,C49,C5,C50,C51,C61,C63,C67,C76,C79,C81,D4 |
Chr2:73952494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C74 |
Chr2:73952496 |
TC |
T |
1bp_deletion | frameshift_variant | 7 | A14,B101,B12,B121,B20,B74,B93 |
Chr2:73952506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793357.1PF12854
PPR_1 15-42 aa
PF01535
PPR 17-45 aa
PF01535
PPR 49-76 aa
PF01535
PPR 79-92 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793357.1 |
Pfam | PF12854 |
PPR_1 | Repeat | 15 | 42 | 2.3e-15 | 56.7 | PPR repeat |
XP_057793357.1 |
Pfam | PF01535 |
PPR | Repeat | 17 | 45 | 1.8e-19 | 69.2 | PPR repeat |
XP_057793357.1 |
Pfam | PF01535 |
PPR | Repeat | 49 | 76 | 1.8e-19 | 69.2 | PPR repeat |
XP_057793357.1 |
Pfam | PF01535 |
PPR | Repeat | 79 | 92 | 1.8e-19 | 69.2 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。