当前解析结果
SmilChr02G005323| 统一新 Gene ID | SmilChr02G005323 |
|---|---|
| 名称 | SmilChr02G005323 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74110219 - 74113040 / - |
| NCBI Gene ID | LOC131009199 |
|---|---|
| GeneID | 131009199 |
| locus_tag | - |
| NCBI Name | LOC131009199 |
| 原始查询 | SmilChr02G005323 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 |
| Arabidopsis | AT2G19130 (AT2G19130)S-locus lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816430] identity=59.7; qcov=0.971; evalue=0; confidence=high |
| Rice | Os07g0553633- identity=56.4; qcov=0.975; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr); PF08276 (PAN_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009199 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792434.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792434.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792434.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792434.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792434.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74110466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B75,C17,C46 |
Chr2:74110516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr2:74110545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B103,B106,B30,D8 |
Chr2:74110669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B34,C77 |
Chr2:74110705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B23,B50,B61,C70,D4 |
Chr2:74110759 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,C48,C6 |
Chr2:74110777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,C48,C6 |
Chr2:74110819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B31,C27,C75 |
Chr2:74110858 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B34,C77 |
Chr2:74110873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B34,C77 |
Chr2:74110912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B135,B136,C35,C8,D6 |
Chr2:74110948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792434.1PF01453
B_lectin 77-184 aa
PF00954
S_locus_glycop 216-321 aa
PF08276
PAN_2 355-412 aa
PF07714
PK_Tyr_Ser-Thr 502-769 aa
PF00069
Pkinase 503-768 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792434.1 |
Pfam | PF01453 |
B_lectin | Repeat | 77 | 184 | 1.1e-29 | 103.6 | D-mannose binding lectin |
XP_057792434.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 216 | 321 | 1.7e-26 | 93.6 | S-locus glycoprotein domain |
XP_057792434.1 |
Pfam | PF08276 |
PAN_2 | Domain | 355 | 412 | 3.3e-17 | 63.1 | PAN-like domain |
XP_057792434.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 502 | 769 | 3.1e-40 | 138.8 | Protein tyrosine and serine/threonine kinase |
XP_057792434.1 |
Pfam | PF00069 |
Pkinase | Domain | 503 | 768 | 3.7e-47 | 161.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。