当前解析结果
SmilChr02G005332| 统一新 Gene ID | SmilChr02G005332 |
|---|---|
| 名称 | SmilChr02G005332 |
| 描述 | putative F-box/FBD/LRR-repeat protein At4g03220 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74153415 - 74155600 / - |
| NCBI Gene ID | LOC131009220 |
|---|---|
| GeneID | 131009220 |
| locus_tag | - |
| NCBI Name | LOC131009220 |
| 原始查询 | SmilChr02G005332 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative F-box/FBD/LRR-repeat protein At4g03220 |
| 产物 | putative F-box/FBD/LRR-repeat protein At4g03220 |
| Arabidopsis | AT4G03220 (AT4G03220)Protein with RNI-like/FBD-like domain [Source:NCBI gene (formerly Entrezgene);Acc:828021] identity=46.3; qcov=1; evalue=1.01e-138; confidence=high |
| Rice | Os07g0118900 (OsFbox331)- identity=22.5; qcov=1.04; evalue=5.22e-14; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF08387 (FBD); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009220 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792462.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792462.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792462.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792462.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792462.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74153976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:74154003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,B94,C22,C27 |
Chr2:74154410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C31,C41 |
Chr2:74154417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74154428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr2:74154474 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr2:74154485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B101,B49,B60 |
Chr2:74154581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B12,B2,C73 |
Chr2:74154590 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A21,B12,C73 |
Chr2:74154590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B12,C73 |
Chr2:74154617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr2:74154754 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792462.1PF12937
F-box-like 26-59 aa
PF00646
F-box 26-63 aa
PF23622
LRR_At1g61320_AtMIF1 124-236 aa
PF23622
LRR_At1g61320_AtMIF1 230-490 aa
PF08387
FBD 441-476 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792462.1 |
Pfam | PF12937 |
F-box-like | Domain | 26 | 59 | 9.7e-07 | 29.2 | F-box-like |
XP_057792462.1 |
Pfam | PF00646 |
F-box | Domain | 26 | 63 | 2.7e-11 | 43.6 | F-box domain |
XP_057792462.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 124 | 236 | 4.1e-16 | 60.0 | At1g61320/AtMIF1, LRR domain |
XP_057792462.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 230 | 490 | 4.1e-16 | 60.0 | At1g61320/AtMIF1, LRR domain |
XP_057792462.1 |
Pfam | PF08387 |
FBD | Repeat | 441 | 476 | 1.6e-08 | 35.0 | FBD |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。