Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005344`

染色体: Chr02 坐标: 74257641-74263659 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005344`
名称	SmilChr02G005344
描述	uncharacterized SmilChr02G005344
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74257641 - 74263659 / `-`

ID 对照

NCBI Gene ID	`LOC131009222`
GeneID	`131009222`
locus_tag	`-`
NCBI Name	`LOC131009222`
原始查询	`SmilChr02G005344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [Source:NCBI gene (formerly Entrezgene);Acc:837026]; symbol=AT1G05280; hit=AT1G05280; species=arabidopsis; confidence=high
产物	ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [Source:NCBI gene (formerly Entrezgene);Acc:837026]; symbol=AT1G05280; hit=AT1G05280; species=arabidopsis; confidence=high
Arabidopsis	`AT1G05280` (AT1G05280) ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) [Source:NCBI gene (formerly Entrezgene);Acc:837026] identity=55.6; qcov=1.02; evalue=5.53e-155; confidence=high
Rice	`Os08g0137300` - identity=47; qcov=0.943; evalue=3.32e-112; confidence=high
GO	GO:0008375 (acetylglucosaminyltransferase activity)
KEGG	-
Pfam	PF02434 (Fringe); PF04646 (DUF604)
InterPro	-
eggNOG	-
NR	GeneID:131009222

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057792465.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057792465.1`
3	Nucleus	细胞核	0.00000	`XP_057792465.1`
4	Chromosome	染色体	0.00000	`XP_057792465.1`
5	Centromere	着丝粒	0.00000	`XP_057792465.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74258044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:74258076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,C26
`Chr2:74258097`	`G`	`GA`	1bp_insertion	frameshift_variant	4	B123,B132,B17,C9
`Chr2:74258097`	`G`	`GA`	1bp_insertion	CDS_variant	4	B123,B132,B17,C9
`Chr2:74258111`	`GTA`	`G`	2bp_deletion	frameshift_variant	5	B123,B132,B17,C43,C9
`Chr2:74258111`	`GTA`	`G`	2bp_deletion	CDS_variant	5	B123,B132,B17,C43,C9
`Chr2:74258121`	`C`	`CAA`	2bp_insertion	frameshift_variant	5	B123,B132,B17,C43,C9
`Chr2:74258121`	`C`	`CAA`	2bp_insertion	CDS_variant	5	B123,B132,B17,C43,C9
`Chr2:74258123`	`T`	`TGG`	2bp_insertion	frameshift_variant	5	B123,B132,B17,C43,C9
`Chr2:74258123`	`T`	`TGG`	2bp_insertion	CDS_variant	5	B123,B132,B17,C43,C9
`Chr2:74258125`	`T`	`TGG`	2bp_insertion	frameshift_variant	5	B123,B132,B17,C43,C9
`Chr2:74258125`	`T`	`TGG`	2bp_insertion	CDS_variant	5	B123,B132,B17,C43,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792465.1

474 aa

237

474

Fringe

DUF604

PF02434 Fringe 141-259 aa PF04646 DUF604 194-447 aa

XP_057792466.1

474 aa

237

474

Fringe

DUF604

PF02434 Fringe 141-259 aa PF04646 DUF604 194-447 aa

XP_057792467.1

469 aa

234

469

Fringe

DUF604

PF02434 Fringe 69-254 aa PF04646 DUF604 190-442 aa

XP_057792468.1

386 aa

193

386

Fringe

DUF604

PF02434 Fringe 53-171 aa PF04646 DUF604 106-359 aa

XP_057792469.1

386 aa

193

386

Fringe

DUF604

PF02434 Fringe 53-171 aa PF04646 DUF604 106-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792465.1`	Pfam	`PF02434`	Fringe	Domain	141	259	4.1e-11	43.3	Fringe-like
`XP_057792465.1`	Pfam	`PF04646`	DUF604	Family	194	447	1.3e-97	326.9	Protein of unknown function, DUF604
`XP_057792466.1`	Pfam	`PF02434`	Fringe	Domain	141	259	4.1e-11	43.3	Fringe-like
`XP_057792466.1`	Pfam	`PF04646`	DUF604	Family	194	447	1.3e-97	326.9	Protein of unknown function, DUF604
`XP_057792467.1`	Pfam	`PF02434`	Fringe	Domain	69	254	2.5e-11	44.0	Fringe-like
`XP_057792467.1`	Pfam	`PF04646`	DUF604	Family	190	442	6.6e-101	337.7	Protein of unknown function, DUF604
`XP_057792468.1`	Pfam	`PF02434`	Fringe	Domain	53	171	2.7e-11	43.9	Fringe-like
`XP_057792468.1`	Pfam	`PF04646`	DUF604	Family	106	359	7.7e-98	327.6	Protein of unknown function, DUF604
`XP_057792469.1`	Pfam	`PF02434`	Fringe	Domain	53	171	2.7e-11	43.9	Fringe-like
`XP_057792469.1`	Pfam	`PF04646`	DUF604	Family	106	359	7.7e-98	327.6	Protein of unknown function, DUF604

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

12 records

下载 cDNA FASTA

XR_009096413.1
ATTTAAATTAATAAGATTTCTTAACTTTTATCCGCAAAATTCGCTCACAGATAAAGAGACACTGTGTGTAAATGTGTGAAAACCGCCGGAAAATGCCCGTGATTCCGTTCGCCGCCACGCGATCTGGCATCAGAGACTTCCTCCTCGCCGTCTCCGCCTTACTCTCCATCTCTCTGCTCCTCTACCTCCACCACCTCGACCTCCCGCCCAACGTCGTCTCTCACTCCGCCGTCCAATCTCGCGCCGCTCTCCCTCCGCCG...

XR_009096412.1
ATTTAAATTAATAAGATTTCTTAACTTTTATCCGCAAAATTCGCTCACAGATAAAGAGACACTGTGTGTAAATGTGTGAAAACCGCCGGAAAATGCCCGTGATTCCGTTCGCCGCCACGCGATCTGGCATCAGAGACTTCCTCCTCGCCGTCTCCGCCTTACTCTCCATCTCTCTGCTCCTCTACCTCCACCACCTCGACCTCCCGCCCAACGTCGTCTCTCACTCCGCCGTCCAATCTCGCGCCGCTCTCCCTCCGCCG...

CDS

5 records

下载 CDS FASTA

LOC131009222
ATGCAGATTACTAAAGTACCGTCCAAACCTCAAGCATCAAATCGCCTCGTAACCTTGATGATCATTTCATTACTTCTATGCACGATGTATCTGCTTGCATCATTCTTGATCCTCCCGAGCACGAAGGTAATACATTTGTCCAGTTCCTTACAAGGGTGGTCATCACCAACTACCCTTGAACACATAGTTTTTGGCATTGCCTCGAATGAGAAGTCCTGGCCTAGCAGGAAGGATTACGTTAGAATCTGGTGGAGGCCTCA...

Protein

5 records

下载 Protein FASTA

XP_057792465.1
MQITKVPSKPQASNRLVTLMIISLLLCTMYLLASFLILPSTKVIHLSSSLQGWSSPTTLEHIVFGIASNEKSWPSRKDYVRIWWRPQEMRGCVFLEGMPPNGTLDQADAGSLPPICASEDTSRFRYTYRHGHRSAIRVARVVLETVALNHPNVRWFVFGDDDTLFFPENLVKTLSKYDDGLWYYIGTNSESFAQNKLFSYEMAFGGAGFAISYPLAKVLASVLDSCLVRYPHLYGSDSRIQACLAELGISLTHEPGFHQM...

XP_057792466.1
MQITKVPSKPQASNRLVTLMIISLLLCTMYLLASFLILPSTKVIHLSSSLQGWSSPTTLEHIVFGIASNEKSWPSRKDYVRIWWRPQEMRGCVFLEGMPPNGTLDQADAGSLPPICASEDTSRFRYTYRHGHRSAIRVARVVLETVALNHPNVRWFVFGDDDTLFFPENLVKTLSKYDDGLWYYIGTNSESFAQNKLFSYEMAFGGAGFAISYPLAKVLASVLDSCLVRYPHLYGSDSRIQACLAELGISLTHEPGFHQM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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