当前解析结果
SmilChr02G005345| 统一新 Gene ID | SmilChr02G005345 |
|---|---|
| 名称 | SmilChr02G005345 |
| 描述 | DEAD-box ATP-dependent RNA helicase 27-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74264302 - 74277639 / - |
| NCBI Gene ID | LOC131009205 |
|---|---|
| GeneID | 131009205 |
| locus_tag | - |
| NCBI Name | LOC131009205 |
| 原始查询 | SmilChr02G005345 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DEAD-box ATP-dependent RNA helicase 27-like |
| 产物 | DEAD-box ATP-dependent RNA helicase 27-like |
| Arabidopsis | AT3G18600 (AT3G18600)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821391] identity=61.6; qcov=0.978; evalue=0; confidence=high |
| Rice | Os03g0802700 (OsRH27)- identity=67.3; qcov=0.859; evalue=0; confidence=high |
| GO | GO:0000463 (maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003676 (nucleic acid binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0005730 (nucleolus) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF13959 (CTE_SPB4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009205 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792442.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057792442.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792442.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792442.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792442.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74264596 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B12,C33 |
Chr2:74264596 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,C33 |
Chr2:74264618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B72,B77,C42,C51,D5 |
Chr2:74264673 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,B17 |
Chr2:74264864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B26,C67 |
Chr2:74264895 |
T |
TA |
1bp_insertion | frameshift_variant | 3 | B111,B31,C10 |
Chr2:74264895 |
T |
TA |
1bp_insertion | CDS_variant | 3 | B111,B31,C10 |
Chr2:74264897 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B8,C20,C77 |
Chr2:74264933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B38 |
Chr2:74265769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr2:74265775 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74265945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792442.1PF00270
DEAD 120-291 aa
PF04851
ResIII 134-283 aa
PF00271
Helicase_C 330-435 aa
PF13959
CTE_SPB4 489-538 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792442.1 |
Pfam | PF00270 |
DEAD | Domain | 120 | 291 | 3.3e-49 | 167.5 | DEAD/DEAH box helicase |
XP_057792442.1 |
Pfam | PF04851 |
ResIII | Family | 134 | 283 | 4.9e-09 | 37.0 | Type III restriction enzyme, res subunit |
XP_057792442.1 |
Pfam | PF00271 |
Helicase_C | Domain | 330 | 435 | 2.7e-27 | 95.9 | Helicase conserved C-terminal domain |
XP_057792442.1 |
Pfam | PF13959 |
CTE_SPB4 | Domain | 489 | 538 | 2.5e-18 | 66.5 | ATP-dependent rRNA helicase SPB4-like, C-terminal extension |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。