Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005357

染色体: Chr02 坐标: 74302413-74305158 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005357
名称SmilChr02G005357
描述peroxidase 27-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向74302413 - 74305158 / -

ID 对照

NCBI Gene IDLOC131009265
GeneID131009265
locus_tag-
NCBI NameLOC131009265
原始查询SmilChr02G005357

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述peroxidase 27-like
产物peroxidase 27-like
ArabidopsisAT3G01190 (AT3G01190)
Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821314]
identity=57.2; qcov=1.01; evalue=5.76e-132; confidence=high
RiceOs11g0661600 (prx134)
-
identity=55.9; qcov=0.947; evalue=2.41e-126; confidence=high
GOGO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process)
KEGGsmil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF00141 (peroxidase)
InterPro-
eggNOG-
NRGeneID:131009265

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Secreted 分泌到胞外 1.00000 XP_057792535.1
2 Cell wall 细胞壁 0.20000 XP_057792535.1
3 Nucleus 细胞核 0.00000 XP_057792535.1
4 Chromosome 染色体 0.00000 XP_057792535.1
5 Centromere 着丝粒 0.00000 XP_057792535.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:74302792 G A EMS_canonical_SNV CDS_variant 4 B134,C38,C79,D10
Chr2:74302837 G A EMS_canonical_SNV CDS_variant 1 C39
Chr2:74302855 G A EMS_canonical_SNV CDS_variant 3 B26,C47,C7
Chr2:74302864 C T EMS_canonical_SNV CDS_variant 4 B89,C38,C79,D10
Chr2:74302874 G A EMS_canonical_SNV CDS_variant 1 C49
Chr2:74302911 C T EMS_canonical_SNV CDS_variant 2 B12,D11
Chr2:74302942 C T EMS_canonical_SNV CDS_variant 3 B102,B126,C26
Chr2:74304111 C T EMS_canonical_SNV CDS_variant 2 C47,C7
Chr2:74304142 G A EMS_canonical_SNV CDS_variant 1 B8
Chr2:74304148 C T EMS_canonical_SNV CDS_variant 1 B104
Chr2:74304159 C T EMS_canonical_SNV CDS_variant 1 C37
Chr2:74304162 G A EMS_canonical_SNV CDS_variant 1 B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792535.1
323 aa
N
1
162
323
peroxidase
C
PF00141 peroxidase 41-282 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792535.1 Pfam PF00141 peroxidase Domain 41 282 2.4e-83 280.3 Peroxidase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936552.1
TTCTATCCAAATTAATCACCAATTAAGCGTAACAACATTCATAAATACTAATAGATATGGCAATTTCAAAGCTTATTTTGCTTTGCTTTCTAGTCTTTGTTTCTTTGGAGGCTAATGCACAAAACCTCAAAGCCAATTTCTACTCGAAGACGTGTCCTAATTTAGGAGCCATTGTTAACCGGACAACTGCAAAGTTGATTGCTCGTGCACCATCGCTTGCGCCGGCGCTCTTGAGAATGCACTTTCACGACTGTTTCGTC...

CDS

1 records

下载 CDS FASTA
LOC131009265
ATGGCAATTTCAAAGCTTATTTTGCTTTGCTTTCTAGTCTTTGTTTCTTTGGAGGCTAATGCACAAAACCTCAAAGCCAATTTCTACTCGAAGACGTGTCCTAATTTAGGAGCCATTGTTAACCGGACAACTGCAAAGTTGATTGCTCGTGCACCATCGCTTGCGCCGGCGCTCTTGAGAATGCACTTTCACGACTGTTTCGTCAGGGGTTGTGATGGATCCATACTAATAAACTCAACGGCGAATAACACAGCAGAAAA...

Protein

1 records

下载 Protein FASTA
XP_057792535.1
MAISKLILLCFLVFVSLEANAQNLKANFYSKTCPNLGAIVNRTTAKLIARAPSLAPALLRMHFHDCFVRGCDGSILINSTANNTAEKDAFPNQSLRGFQIIDAVKIEVEKQCPGVVSCADILALVARDAVLQIKGPFWSVPLGRRDGTVSLLNDAFANLPPPNFNISQLISSFAAKGLSVKDLVVLSGGHTIGISHCPSIASRIYNFTGRNDADPSMDPNYVAALKRRCPVGDTTSIIQIDPGSSQEFDVDYFTIVRQRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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