当前解析结果
SmilChr02G005357| 统一新 Gene ID | SmilChr02G005357 |
|---|---|
| 名称 | SmilChr02G005357 |
| 描述 | peroxidase 27-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74302413 - 74305158 / - |
| NCBI Gene ID | LOC131009265 |
|---|---|
| GeneID | 131009265 |
| locus_tag | - |
| NCBI Name | LOC131009265 |
| 原始查询 | SmilChr02G005357 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 27-like |
| 产物 | peroxidase 27-like |
| Arabidopsis | AT3G01190 (AT3G01190)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821314] identity=57.2; qcov=1.01; evalue=5.76e-132; confidence=high |
| Rice | Os11g0661600 (prx134)- identity=55.9; qcov=0.947; evalue=2.41e-126; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009265 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057792535.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057792535.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792535.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792535.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792535.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74302792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,C38,C79,D10 |
Chr2:74302837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:74302855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C47,C7 |
Chr2:74302864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B89,C38,C79,D10 |
Chr2:74302874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:74302911 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,D11 |
Chr2:74302942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B126,C26 |
Chr2:74304111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C47,C7 |
Chr2:74304142 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr2:74304148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:74304159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:74304162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792535.1PF00141
peroxidase 41-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792535.1 |
Pfam | PF00141 |
peroxidase | Domain | 41 | 282 | 2.4e-83 | 280.3 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。