当前解析结果
SmilChr02G005359| 统一新 Gene ID | SmilChr02G005359 |
|---|---|
| 名称 | SmilChr02G005359 |
| 描述 | peroxidase 27-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74307777 - 74310608 / - |
| NCBI Gene ID | LOC131009264 |
|---|---|
| GeneID | 131009264 |
| locus_tag | - |
| NCBI Name | LOC131009264 |
| 原始查询 | SmilChr02G005359 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 27-like |
| 产物 | peroxidase 27-like |
| Arabidopsis | AT3G01190 (AT3G01190)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821314] identity=62.1; qcov=1; evalue=2.49e-140; confidence=high |
| Rice | Os11g0661600 (prx134)- identity=58.9; qcov=1.03; evalue=7.14e-137; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009264 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057792534.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057792534.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792534.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792534.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792534.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74308056 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B108,B35,C23 |
Chr2:74308101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B26 |
Chr2:74308230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr2:74308238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr2:74308257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B30,B65 |
Chr2:74308272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B9,C57,C64,C66,C71 |
Chr2:74308308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74308311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,C47,C7 |
Chr2:74308314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74308317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B51,D4 |
Chr2:74308318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B55,B7 |
Chr2:74308345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792534.1PF00141
peroxidase 42-286 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792534.1 |
Pfam | PF00141 |
peroxidase | Domain | 42 | 286 | 6.6e-81 | 272.3 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。