Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005362`

染色体: Chr02 坐标: 74333078-74341607 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005362`
名称	SmilChr02G005362
描述	exocyst complex component SEC3A-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74333078 - 74341607 / `+`

ID 对照

NCBI Gene ID	`LOC131009198`
GeneID	`131009198`
locus_tag	`-`
NCBI Name	`LOC131009198`
原始查询	`SmilChr02G005362`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exocyst complex component SEC3A-like
产物	exocyst complex component SEC3A-like
Arabidopsis	`AT1G47550` (SEC3A) exocyst complex component sec3A [Source:NCBI gene (formerly Entrezgene);Acc:841164] identity=70.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os03g0625700` (OsSEC3A) - identity=64.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0000145 (exocyst); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0005886 (plasma membrane); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport)
KEGG	-
Pfam	PF09763 (Sec3_CC); PF15277 (Sec3-PIP2_bind); PF20654 (Sec3_C-term)
InterPro	-
eggNOG	-
NR	GeneID:131009198

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057792432.1`
2	Cytosol	细胞质基质	0.80000	`XP_057792432.1`
3	Trans-golgi network	Trans-golgi network	0.60000	`XP_057792433.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057792432.1`
5	Endocytic vesicle	Endocytic vesicle	0.40000	`XP_057792432.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74333253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B110,C38,C42,C79
`Chr2:74333259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B67,C26
`Chr2:74333356`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	B88
`Chr2:74333356`	`ATC`	`A`	2bp_deletion	CDS_variant	1	B88
`Chr2:74333839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,C60,D7
`Chr2:74334036`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr2:74334069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr2:74334273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:74334722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr2:74334770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B140,B5
`Chr2:74334785`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C46
`Chr2:74335149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,B106,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792432.1

871 aa

436

871

Sec3-PIP2_bind

Sec3_CC

Sec3_C-term

PF15277 Sec3-PIP2_bind 50-145 aa PF09763 Sec3_CC 226-347 aa PF20654 Sec3_C-term 566-854 aa

XP_057792433.1

763 aa

382

763

Sec3_CC

Sec3_C-term

PF09763 Sec3_CC 118-239 aa PF20654 Sec3_C-term 458-746 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792432.1`	Pfam	`PF15277`	Sec3-PIP2_bind	Domain	50	145	2.9e-15	56.8	Exocyst complex component SEC3 N-terminal PIP2 binding PH
`XP_057792432.1`	Pfam	`PF09763`	Sec3_CC	Repeat	226	347	2e-24	86.6	Exocyst complex component Sec3, coiled-coil
`XP_057792432.1`	Pfam	`PF20654`	Sec3_C-term	Repeat	566	854	2.8e-32	113.0	Exocyst complex component Sec3, C-terminal
`XP_057792433.1`	Pfam	`PF09763`	Sec3_CC	Repeat	118	239	1.1e-24	87.5	Exocyst complex component Sec3, coiled-coil
`XP_057792433.1`	Pfam	`PF20654`	Sec3_C-term	Repeat	458	746	2.1e-32	113.4	Exocyst complex component Sec3, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936449.1
TAACAATTTGTAGGATCTGAGAAAATTAATTAATTTCACCGTAAGCTTAGATTCCCAACCGCAAAGCACACACCGAATCACACTATCCCAACCGCCGGAGAGAAGAGATGGCGAAATCGAGCGCCGACGACGAGGAGCTCCGCCGCGCCTGCGAGGCGGCGATCGAGGGAACCAAGCAGAACGTCGTGTTGTCGATGAGGGTGGCCAAGACAAACGTCATGTGGAACAAAGCCGGCAAATTGGGGCGCGGCAGCATGGCC...

XM_057936450.1
GTAAAAAGTCGAAAGCTTTTCTCCGTGTCATGAAATATTCGTCTGGAGGTGTTCTTGAGGCTGACAAATTCTACAAGTTGAAGCATCTTTCGAAAGTGGAAGTTGTATCCAACGACCCGAGTGGATGTACTTTCACGCTGAGATGTTTTCATGAAGGGTTTCGATAACCTAAGAAATCAAAGTGTTGCCCCGCCTCAGTGGATGATGCGCAACGTTGATGACAGGAACCGAATTCTGCTTTCCATCTTAAATATCTGCAG...

CDS

2 records

下载 CDS FASTA

LOC131009198
ATGGCGAAATCGAGCGCCGACGACGAGGAGCTCCGCCGCGCCTGCGAGGCGGCGATCGAGGGAACCAAGCAGAACGTCGTGTTGTCGATGAGGGTGGCCAAGACAAACGTCATGTGGAACAAAGCCGGCAAATTGGGGCGCGGCAGCATGGCCAAGCCTCGCGTTCTCGCAATCTCAGTAAAGACAAAAGGTAAAAAGTCGAAAGCTTTTCTCCGTGTCATGAAATATTCGTCTGGAGGTGTTCTTGAGGCTGACAAATT...

LOC131009198
ATGAAGGGTTTCGATAACCTAAGAAATCAAAGTGTTGCCCCGCCTCAGTGGATGATGCGCAACGTTGATGACAGGAACCGAATTCTGCTTTCCATCTTAAATATCTGCAGGGATTCGGGTGATCTTCCTAAAGTTGTTGGCATAGACATTGTAGAGATGGCTCTTTGGGCGAAGCAAAATACACAAGCAATTCCTAAGCCGCAACAAACAAGCTTTCAAGAAGGAGGGCTTGATCCCGTTGTCATCACGGAAACTGACAT...

Protein

2 records

下载 Protein FASTA

XP_057792432.1
MAKSSADDEELRRACEAAIEGTKQNVVLSMRVAKTNVMWNKAGKLGRGSMAKPRVLAISVKTKGKKSKAFLRVMKYSSGGVLEADKFYKLKHLSKVEVVSNDPSGCTFTLGFDNLRNQSVAPPQWMMRNVDDRNRILLSILNICRDSGDLPKVVGIDIVEMALWAKQNTQAIPKPQQTSFQEGGLDPVVITETDMQVTVEKELVSQAEEEDMEALLGTYVMGIGEAEAFSERLKRELQALEAANVHAIMENESLIHQVLH...

XP_057792433.1
MKGFDNLRNQSVAPPQWMMRNVDDRNRILLSILNICRDSGDLPKVVGIDIVEMALWAKQNTQAIPKPQQTSFQEGGLDPVVITETDMQVTVEKELVSQAEEEDMEALLGTYVMGIGEAEAFSERLKRELQALEAANVHAIMENESLIHQVLHGLEVASNCVEDMDEWLCMFNVKLRHMREDIESIETGNNRLEMQSVNNKALVEELDKLLEKLRMPSEYAACLMGGSFDEASMFDNMESCEWLGSALSSLEVPNLDPCFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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