Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005376`

染色体: Chr02 坐标: 74431320-74436234 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005376`
名称	SmilChr02G005376
描述	bicyclo-germacrene synthase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74431320 - 74436234 / `-`

ID 对照

NCBI Gene ID	`LOC131009352`
GeneID	`131009352`
locus_tag	`-`
NCBI Name	`LOC131009352`
原始查询	`SmilChr02G005376`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bicyclo-germacrene synthase-like
产物	bicyclo-germacrene synthase-like
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=35.7; qcov=0.98; evalue=3.97e-118; confidence=medium
Rice	`Os08g0139700` (OsTPS29) - identity=36; qcov=1.03; evalue=7.35e-114; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131009352

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057792632.1`
2	Chloroplast	叶绿体	0.60000	`XP_057792632.1`
3	Cytoplasm	细胞质	0.40000	`XP_057792632.1`
4	Nucleus	细胞核	0.00000	`XP_057792632.1`
5	Chromosome	染色体	0.00000	`XP_057792632.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74431538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,C3,C70
`Chr2:74431583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:74431868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:74431912`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:74431971`	`TC`	`T`	1bp_deletion	frameshift_variant	20	A1,A18,B14,B17,B25,B29,B30,B52,B55,B63,B7,B78,C12,C19,C22,C23,C44,C6,D3,D5
`Chr2:74432048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B35,D10
`Chr2:74432063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:74432401`	`C`	`CT`	1bp_insertion	frameshift_variant	2	B136,C75
`Chr2:74432401`	`C`	`CT`	1bp_insertion	CDS_variant	2	B136,C75
`Chr2:74432493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr2:74433341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,C71
`Chr2:74433342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B54,B67,B68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792632.1

554 aa

277

554

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 32-206 aa PF03936 Terpene_synth_C 263-498 aa PF19086 Terpene_syn_C_2 303-498 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792632.1`	Pfam	`PF01397`	Terpene_synth	Repeat	32	206	2.6e-55	187.8	Terpene synthase, N-terminal domain
`XP_057792632.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	263	498	1.7e-81	273.8	Terpene synthase family, metal binding domain
`XP_057792632.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	303	498	2.4e-46	158.7	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936649.1
ACCAACCATATTTCACACACACACACACACACACTTAATTAGAAGATGCAAATAGTTTTATCAGCCGTTCCTGCAATGAACAAGAATTATGTGAAGAATTTAGAAGAAATTCGTAAATCAGCGAAATTTCATCCATCCATTTGGGGCGACTATTTTCTAAGATATGATTCGGATAAAACGAAAATCACTGATGCTGAACAAGAAGAGCTCGCAAAGCAGAAAGAAAAGGTCAGAAATTTGTTAGCTCAAACTCCAAATGA...

CDS

1 records

下载 CDS FASTA

LOC131009352
ATGCAAATAGTTTTATCAGCCGTTCCTGCAATGAACAAGAATTATGTGAAGAATTTAGAAGAAATTCGTAAATCAGCGAAATTTCATCCATCCATTTGGGGCGACTATTTTCTAAGATATGATTCGGATAAAACGAAAATCACTGATGCTGAACAAGAAGAGCTCGCAAAGCAGAAAGAAAAGGTCAGAAATTTGTTAGCTCAAACTCCAAATGATTCAACGTATAAAATGGAACTCATCGATGCAATCCAGCGCCTCGG...

Protein

1 records

下载 Protein FASTA

XP_057792632.1
MQIVLSAVPAMNKNYVKNLEEIRKSAKFHPSIWGDYFLRYDSDKTKITDAEQEELAKQKEKVRNLLAQTPNDSTYKMELIDAIQRLGVEYHFQKEIEESLQNIHENSKDKDDLNLSSVALRFRLLRQQGYNVPSDVFRKFTDSEGNYAASLQNNVEGLLSLYEAAHLGTQGEEILDRAIEFCSSHLHASLHNITSASLSKLVKEALRTPNRRSLIRLGARRFIAAYEEDESRNETLLNFAKLDFNIVQKMHQRELSDATR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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