当前解析结果
SmilChr02G005377| 统一新 Gene ID | SmilChr02G005377 |
|---|---|
| 名称 | SmilChr02G005377 |
| 描述 | bicyclo-germacrene synthase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74441904 - 74445618 / - |
| NCBI Gene ID | LOC131009350 |
|---|---|
| GeneID | 131009350 |
| locus_tag | - |
| NCBI Name | LOC131009350 |
| 原始查询 | SmilChr02G005377 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bicyclo-germacrene synthase-like |
| 产物 | bicyclo-germacrene synthase-like |
| Arabidopsis | AT5G23960 (TPS21)terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=34.6; qcov=0.987; evalue=1.25e-111; confidence=low |
| Rice | Os08g0139700 (OsTPS29)- identity=35.5; qcov=0.978; evalue=9.13e-111; confidence=medium |
| GO | GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process) |
| KEGG | smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009350 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057792628.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057792628.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057792628.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792628.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74442118 |
CTG |
C |
2bp_deletion | frameshift_variant | 28 | A1,A14,A8,B101,B110,B120,B132,B134,B140,B2,B39,B49,B5,B62,B83,C10,C11,C13,C27,C3,C46,C53,C54,C63,C69,C76,C83,D11 |
Chr2:74442121 |
C |
CAT |
2bp_insertion | frameshift_variant | 25 | A1,A14,A8,B101,B110,B120,B132,B134,B140,B2,B39,B49,B5,B83,C10,C11,C27,C3,C46,C53,C54,C69,C76,C83,D11 |
Chr2:74442144 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr2:74442158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C16,D9 |
Chr2:74442306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:74442318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr2:74442340 |
AAC |
A |
2bp_deletion | frameshift_variant | 18 | A8,B123,B125,B38,B39,B5,B62,B67,B97,C2,C22,C29,C4,C49,C6,C64,C66,C73 |
Chr2:74442345 |
AG |
A |
1bp_deletion | frameshift_variant | 19 | A8,B123,B125,B135,B38,B39,B5,B62,B67,B97,C2,C22,C29,C4,C49,C6,C64,C66,C73 |
Chr2:74442364 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B123,C29,C66 |
Chr2:74442364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,C29,C66 |
Chr2:74442365 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74443204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,C11,C27,C69,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792628.1PF01397
Terpene_synth 28-202 aa
PF03936
Terpene_synth_C 259-497 aa
PF19086
Terpene_syn_C_2 299-497 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792628.1 |
Pfam | PF01397 |
Terpene_synth | Repeat | 28 | 202 | 1.7e-55 | 188.4 | Terpene synthase, N-terminal domain |
XP_057792628.1 |
Pfam | PF03936 |
Terpene_synth_C | Domain | 259 | 497 | 1.4e-79 | 267.5 | Terpene synthase family, metal binding domain |
XP_057792628.1 |
Pfam | PF19086 |
Terpene_syn_C_2 | Domain | 299 | 497 | 2.8e-46 | 158.5 | Terpene synthase family 2, C-terminal metal binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。