Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005379`

染色体: Chr02 坐标: 74461454-74468005 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005379`
名称	SmilChr02G005379
描述	DNA repair protein RAD16-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74461454 - 74468005 / `-`

ID 对照

NCBI Gene ID	`LOC131009362`
GeneID	`131009362`
locus_tag	`-`
NCBI Name	`LOC131009362`
原始查询	`SmilChr02G005379`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA repair protein RAD16-like
产物	DNA repair protein RAD16-like
Arabidopsis	`AT1G05120` (AT1G05120) Helicase protein with RING/U-box domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839319] identity=63.4; qcov=0.878; evalue=0; confidence=high
Rice	`Os07g0511500` - identity=61.8; qcov=0.707; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2)
InterPro	-
eggNOG	-
NR	GeneID:131009362

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792639.1`
2	Chromosome	染色体	0.00000	`XP_057792639.1`
3	Centromere	着丝粒	0.00000	`XP_057792639.1`
4	Chromatin	染色质	0.00000	`XP_057792639.1`
5	Telomere	端粒	0.00000	`XP_057792639.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74461747`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C47,C7
`Chr2:74461855`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C47,C7
`Chr2:74461930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C47,C7
`Chr2:74462418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,B78,C39
`Chr2:74462691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:74462700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B72,C51,D7
`Chr2:74462727`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:74463139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:74463164`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C15,C46,C57
`Chr2:74463238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr2:74463697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B78,C39,C8
`Chr2:74463707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,C27

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792639.1

899 aa

450

899

SNF2-rel_dom

zf-C3HC4_3

zf-C3HC4_2

zf-C3HC4

Helicase_C

PF00176 SNF2-rel_dom 188-622 aa PF13920 zf-C3HC4_3 642-688 aa PF13923 zf-C3HC4_2 644-684 aa PF00097 zf-C3HC4 645-684 aa PF00271 Helicase_C 729-843 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792639.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	188	622	4.7e-54	184.1	SNF2-related domain
`XP_057792639.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	642	688	8.7e-08	32.6	Zinc finger, C3HC4 type (RING finger)
`XP_057792639.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	644	684	5.3e-08	33.2	Zinc finger, C3HC4 type (RING finger)
`XP_057792639.1`	Pfam	`PF00097`	zf-C3HC4	Domain	645	684	1e-06	29.2	Zinc finger, C3HC4 type (RING finger)
`XP_057792639.1`	Pfam	`PF00271`	Helicase_C	Domain	729	843	2.2e-21	76.9	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936656.1
GAAATTTCTCCGTAACCACCACCACCACCCCACCCCACCCCCTAAACCCACCACCACCCACCCCCGCGCTTTTTAACTTTCTTCTGCTTTTTTAATGGCCGTCTGCACAAATCACACTGATTATCGTTTCAATCAAGCAGGAAGCTAAAATTTTCAAACCCTAATTTTTTTTATCTTCGTCATTACTCTGCTTTTTCCAATTGCAAAATGAAGCTCCGCTCTCATGGCGATGGCGCTTCTTCTTCCAAAGGGAAAGCGAA...

CDS

1 records

下载 CDS FASTA

LOC131009362
ATGAAGCTCCGCTCTCATGGCGATGGCGCTTCTTCTTCCAAAGGGAAAGCGAAATTGAAGTACGGAGACAGTTCTGATGCGGAAGATTATGGAGCGGCGTCATCCGATTCTGATTTTAATGTGCTGAGTGGTGATGAAGGTGAAGATCTGCTTGATGTACTTGCATACAGCGCGGAGGTTTTCAATTTGAATTATGTTAGTGATGAAGATGGTGTCCCGAAAAGGAGGAAAAAGAACTCCTACGGAAAAAGGGGAAGTCA...

Protein

1 records

下载 Protein FASTA

XP_057792639.1
MKLRSHGDGASSSKGKAKLKYGDSSDAEDYGAASSDSDFNVLSGDEGEDLLDVLAYSAEVFNLNYVSDEDGVPKRRKKNSYGKRGSQSSKKAEEEESERGTGAHIETVIGIDPGKIEFAGGIAEKSCRKKKGRKKKDRPILMWEVLEQENDRWIEENLQIDMDLINQNEIVMETVEPSDDLIIPLLRYQKEWLAWALKQEESTARGGILADEMGMGKTLQAIALVLFKRSFSSGIPDPALPSSSISSSRELPPIKGTLVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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