Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005404`

染色体: Chr02 坐标: 74576392-74579080 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005404`
名称	SmilChr02G005404
描述	uncharacterized SmilChr02G005404
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74576392 - 74579080 / `+`

ID 对照

NCBI Gene ID	`LOC131009374`
GeneID	`131009374`
locus_tag	`-`
NCBI Name	`LOC131009374`
原始查询	`SmilChr02G005404`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT3G09140; symbol=AT3G09140; hit=AT3G09140; species=arabidopsis; confidence=low
产物	AT3G09140; symbol=AT3G09140; hit=AT3G09140; species=arabidopsis; confidence=low
Arabidopsis	`AT3G09140` (AT3G09140) - identity=27.6; qcov=1.09; evalue=3.25e-49; confidence=low
Rice	`Os04g0594500` - identity=29.9; qcov=0.785; evalue=1.38e-38; confidence=low
GO	-
KEGG	-
Pfam	PF05056 (DUF674)
InterPro	-
eggNOG	-
NR	GeneID:131009374

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792658.1`
2	Cytoplasm	细胞质	0.20000	`XP_057792658.1`
3	Chromosome	染色体	0.00000	`XP_057792658.1`
4	Centromere	着丝粒	0.00000	`XP_057792658.1`
5	Chromatin	染色质	0.00000	`XP_057792658.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74577439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B140,B30,B31,B56
`Chr2:74577469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,C56,C87
`Chr2:74577527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:74577534`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:74577540`	`ACG`	`A`	2bp_deletion	frameshift_variant	1	B33
`Chr2:74577540`	`ACG`	`A`	2bp_deletion	CDS_variant	1	B33
`Chr2:74577543`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B33
`Chr2:74577543`	`AG`	`A`	1bp_deletion	CDS_variant	1	B33
`Chr2:74577596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B118,B125,B60,B7,C41
`Chr2:74577598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B35,B54,C13
`Chr2:74577623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B131,C55
`Chr2:74577633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792658.1

469 aa

234

469

DUF674

PF05056 DUF674 8-428 aa PF05056 DUF674 385-464 aa

XP_057792659.1

469 aa

234

469

DUF674

PF05056 DUF674 8-428 aa PF05056 DUF674 385-464 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792658.1`	Pfam	`PF05056`	DUF674	Family	8	428	1.7e-99	334.4	Protein of unknown function (DUF674)
`XP_057792658.1`	Pfam	`PF05056`	DUF674	Family	385	464	1.7e-99	334.4	Protein of unknown function (DUF674)
`XP_057792659.1`	Pfam	`PF05056`	DUF674	Family	8	428	1.7e-99	334.4	Protein of unknown function (DUF674)
`XP_057792659.1`	Pfam	`PF05056`	DUF674	Family	385	464	1.7e-99	334.4	Protein of unknown function (DUF674)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936675.1
AGTGAAAAAGCAAAGATTCGCCAATGGCATAGCTCAACTGTTTGCTCCATTTTGCTTTAGTAGCCAAATAATGCAAGTGCTTCTCTCTCACTCATCTATCCACTCCTCTCTTCACTTTTAGCCGCTCAAAACCACCGTCGCAGCCACCCTTCCTCCGCCGCGAGCTCAGCCACCCTCATCCAACAACATGTTTTCTTCTGGGTTGACTTGAAAATCTGTCTTTTTCTCTGAAAATCCCCAATTTTATAGATTGGAAATCA...

XM_057936676.1
AGTGAAAAAGCAAAGATTCGCCAATGGCATAGCTCAACTGTTTGCTCCATTTTGCTTTAGTAGCCAAATAATGCAAGTGCTTCTCTCTCACTCATCTATCCACTCCTCTCTTCACTTTTAGCCGCTCAAAACCACCGTCGCAGCCACCCTTCCTCCGCCGCGAGCTCAGCCACCCTCATCCAACAACATGTTTTCTTCTGGGTTGACTTGAAAATCTGTCTTTTTCTCTGAAAATCCCCAATTTTATAGATTGGAAATCA...

CDS

2 records

下载 CDS FASTA

LOC131009374
ATGGCTGATGATAAAAAGGGTGCTACATTTTCGTTGAAAGTGATGATCAATAAAGAGAGAACCAAGGTATTCTTCGCAGAAGCCGATAGCCATTTTGCAGACATTTTGTTAAGCTTCCTGAGTTTGCCGTTGGGAAGAATTGTGAAAGTCCTCGAGAAGCACTATGGAGACGACGAGGCGCCTACCATTGGAAGCTTAAGCAGTTTGTACCGTAGCGCAGTAGATCTCGACAGTGCCCATTTCTGGACAGATGGGGCTAA...

Protein

2 records

下载 Protein FASTA

XP_057792658.1
MADDKKGATFSLKVMINKERTKVFFAEADSHFADILLSFLSLPLGRIVKVLEKHYGDDEAPTIGSLSSLYRSAVDLDSAHFWTDGAKKTLLDPTSSSEAEYQRLKLDITDFQPAEYFYCIGLYQCSYRFRSVSIYYDHVKKCKSYSCDGAMKIEVVKKGSEAAASRDGVFTMNTSSFIISDDLHIFPNETGLLGIISLLGITDMDNAEQIEVDLGFNEIMNLLKASLTSPTPLSDVILNKTTQLIYSTLMVTQPHTGNKE...

XP_057792659.1
MADDKKGATFSLKVMINKERTKVFFAEADSHFADILLSFLSLPLGRIVKVLEKHYGDDEAPTIGSLSSLYRSAVDLDSAHFWTDGAKKTLLDPTSSSEAEYQRLKLDITDFQPAEYFYCIGLYQCSYRFRSVSIYYDHVKKCKSYSCDGAMKIEVVKKGSEAAASRDGVFTMNTSSFIISDDLHIFPNETGLLGIISLLGITDMDNAEQIEVDLGFNEIMNLLKASLTSPTPLSDVILNKTTQLIYSTLMVTQPHTGNKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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