当前解析结果
SmilChr02G005428| 统一新 Gene ID | SmilChr02G005428 |
|---|---|
| 名称 | SmilChr02G005428 |
| 描述 | zinc finger BED domain-containing protein DAYSLEEPER-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74725462 - 74728384 / - |
| NCBI Gene ID | LOC131009388 |
|---|---|
| GeneID | 131009388 |
| locus_tag | - |
| NCBI Name | LOC131009388 |
| 原始查询 | SmilChr02G005428 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein DAYSLEEPER-like |
| 产物 | zinc finger BED domain-containing protein DAYSLEEPER-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=46.3; qcov=0.989; evalue=0; confidence=high |
| Rice | Os03g0733400- identity=41.9; qcov=1.03; evalue=0; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009388 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792675.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792675.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792675.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792675.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792675.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74725628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:74725653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C41,D6 |
Chr2:74725707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B30 |
Chr2:74725730 |
CG |
C |
1bp_deletion | frameshift_variant | 5 | B105,B28,B41,B70,D5 |
Chr2:74725730 |
CG |
C |
1bp_deletion | CDS_variant | 5 | B105,B28,B41,B70,D5 |
Chr2:74725736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B140,D4 |
Chr2:74725748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B20,B62,B72,C21,C79 |
Chr2:74725764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C20,C69 |
Chr2:74725781 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C38 |
Chr2:74725781 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C38 |
Chr2:74725889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C51 |
Chr2:74726043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B120,B31,C25,C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792675.1PF27041
ZBED1_RNase-like 178-266 aa
PF27039
ZBED1_RNase-like_helical 270-379 aa
PF14372
hAT-like_RNase-H 399-490 aa
PF05699
Dimer_Tnp_hAT 532-614 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792675.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 178 | 266 | 1.7e-17 | 64.0 | ZBED1 RNase-like domain |
XP_057792675.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 270 | 379 | 1.1e-32 | 113.1 | ZBED1 RNase-like helical domain |
XP_057792675.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 399 | 490 | 1.6e-26 | 93.1 | hAT-like transposase, RNase-H fold |
XP_057792675.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 532 | 614 | 2.2e-28 | 98.6 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。