当前解析结果
SmilChr02G005430| 统一新 Gene ID | SmilChr02G005430 |
|---|---|
| 名称 | SmilChr02G005430 |
| 描述 | uncharacterized SmilChr02G005430 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74733230 - 74735034 / - |
| NCBI Gene ID | LOC131009391 |
|---|---|
| GeneID | 131009391 |
| locus_tag | - |
| NCBI Name | LOC131009391 |
| 原始查询 | SmilChr02G005430 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AT3G09110; symbol=AT3G09110; hit=AT3G09110; species=arabidopsis; confidence=low |
| 产物 | AT3G09110; symbol=AT3G09110; hit=AT3G09110; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G09110 (AT3G09110)- identity=28.8; qcov=0.767; evalue=1.04e-29; confidence=low |
| Rice | Os04g0594500- identity=25; qcov=0.827; evalue=3.71e-23; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF05056 (DUF674) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009391 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792677.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057792677.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057792677.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792677.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792677.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74733700 |
G |
GGT |
2bp_insertion | frameshift_variant | 8 | B114,B119,B18,B89,C1,C84,D2,D8 |
Chr2:74733745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr2:74733851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,C12 |
Chr2:74733871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C12,C74,C87,D6 |
Chr2:74733898 |
C |
CT |
1bp_insertion | frameshift_variant | 17 | B1,B117,B124,B13,B14,B140,B26,B63,B80,B82,B98,C21,C4,C41,C43,C54,D7 |
Chr2:74733906 |
A |
ACG |
2bp_insertion | frameshift_variant | 18 | B112,B134,B138,B16,B47,B48,B66,B77,B92,C2,C35,C50,C52,C63,C80,C82,C87,D2 |
Chr2:74733909 |
GAA |
G |
2bp_deletion | frameshift_variant | 15 | B112,B134,B138,B16,B47,B48,B66,B77,B92,C2,C35,C52,C63,C82,C87 |
Chr2:74733922 |
T |
TCA |
2bp_insertion | frameshift_variant | 17 | A15,B112,B134,B138,B16,B47,B54,B66,B92,B98,C2,C35,C38,C62,C63,C82,C87 |
Chr2:74733927 |
CCA |
C |
2bp_deletion | frameshift_variant | 16 | A15,B112,B134,B138,B16,B54,B66,B92,B98,C2,C35,C38,C62,C63,C68,C87 |
Chr2:74733981 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B44 |
Chr2:74733981 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B44 |
Chr2:74733986 |
AC |
A |
1bp_deletion | frameshift_variant | 9 | A7,B107,B25,B66,B69,B77,C13,C48,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792677.1PF05056
DUF674 8-113 aa
PF05056
DUF674 120-295 aa
PF05056
DUF674 318-410 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792677.1 |
Pfam | PF05056 |
DUF674 | Family | 8 | 113 | 5.9e-69 | 233.8 | Protein of unknown function (DUF674) |
XP_057792677.1 |
Pfam | PF05056 |
DUF674 | Family | 120 | 295 | 5.9e-69 | 233.8 | Protein of unknown function (DUF674) |
XP_057792677.1 |
Pfam | PF05056 |
DUF674 | Family | 318 | 410 | 5.9e-69 | 233.8 | Protein of unknown function (DUF674) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。