当前解析结果
SmilChr02G005432| 统一新 Gene ID | SmilChr02G005432 |
|---|---|
| 名称 | SmilChr02G005432 |
| 描述 | cyprosin-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74742249 - 74746838 / - |
| NCBI Gene ID | LOC131009393 |
|---|---|
| GeneID | 131009393 |
| locus_tag | - |
| NCBI Name | LOC131009393 |
| 原始查询 | SmilChr02G005432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyprosin-like |
| 产物 | cyprosin-like |
| Arabidopsis | AT1G11910 (APA1)aspartic proteinase A1 [Source:NCBI gene (formerly Entrezgene);Acc:837740] identity=72.9; qcov=0.998; evalue=0; confidence=high |
| Rice | Os05g0567100 (Oryzasin)- identity=70.7; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0006629 (lipid metabolic process) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF03489 (SapB_2); PF05184 (SapB_1); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009393 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057792679.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057792679.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792679.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792679.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792679.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74742497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B44,C45,C60,D7 |
Chr2:74742607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B62,C21 |
Chr2:74742659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C8 |
Chr2:74742660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,B16,B3,C35,D11 |
Chr2:74742671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,C11,C60,C69,D10 |
Chr2:74743433 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B42,B43 |
Chr2:74743433 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B42,B43 |
Chr2:74743462 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,C54 |
Chr2:74743580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C73 |
Chr2:74743657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B124,B7 |
Chr2:74744062 |
GC |
G |
1bp_deletion | frameshift_variant | 5 | A5,B108,B33,C78,C80 |
Chr2:74744062 |
GC |
G |
1bp_deletion | CDS_variant | 5 | A5,B108,B33,C78,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792679.1PF00026
Asp 83-505 aa
PF14543
TAXi_N 84-241 aa
PF03489
SapB_2 317-350 aa
PF05184
SapB_1 379-415 aa
XP_057792681.1PF00026
Asp 83-505 aa
PF14543
TAXi_N 84-241 aa
PF03489
SapB_2 317-350 aa
PF05184
SapB_1 379-415 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792679.1 |
Pfam | PF00026 |
Asp | Domain | 83 | 505 | 1.2e-119 | 400.1 | Eukaryotic aspartyl protease |
XP_057792679.1 |
Pfam | PF14543 |
TAXi_N | Domain | 84 | 241 | 2e-12 | 48.4 | Xylanase inhibitor N-terminal |
XP_057792679.1 |
Pfam | PF03489 |
SapB_2 | Family | 317 | 350 | 9.7e-12 | 45.5 | Saposin-like type B, region 2 |
XP_057792679.1 |
Pfam | PF05184 |
SapB_1 | Domain | 379 | 415 | 1.6e-13 | 51.1 | Saposin-like type B, region 1 |
XP_057792681.1 |
Pfam | PF00026 |
Asp | Domain | 83 | 505 | 1.2e-119 | 400.1 | Eukaryotic aspartyl protease |
XP_057792681.1 |
Pfam | PF14543 |
TAXi_N | Domain | 84 | 241 | 2e-12 | 48.4 | Xylanase inhibitor N-terminal |
XP_057792681.1 |
Pfam | PF03489 |
SapB_2 | Family | 317 | 350 | 9.7e-12 | 45.5 | Saposin-like type B, region 2 |
XP_057792681.1 |
Pfam | PF05184 |
SapB_1 | Domain | 379 | 415 | 1.6e-13 | 51.1 | Saposin-like type B, region 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。