Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005448`

染色体: Chr02 坐标: 74838279-74842611 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005448`
名称	SmilChr02G005448
描述	serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74838279 - 74842611 / `-`

ID 对照

NCBI Gene ID	`LOC131009410`
GeneID	`131009410`
locus_tag	`-`
NCBI Name	`LOC131009410`
原始查询	`SmilChr02G005448`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like
产物	serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like
Arabidopsis	`AT4G15415` (ATB' GAMMA) Protein phosphatase 2A regulatory B subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:827211] identity=65.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os04g0485100` (OsPP2A-B'eta) - identity=62.9; qcov=0.967; evalue=0; confidence=high
GO	GO:0000159 (protein phosphatase type 2A complex); GO:0007165 (signal transduction); GO:0019888 (protein phosphatase regulator activity)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01603 (B56)
InterPro	-
eggNOG	-
NR	GeneID:131009410

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057792706.1`
2	Cytosol	细胞质基质	1.00000	`XP_057792706.1`
3	Nucleus	细胞核	0.40000	`XP_057792706.1`
4	Chromosome	染色体	0.00000	`XP_057792706.1`
5	Centromere	着丝粒	0.00000	`XP_057792706.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74838804`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B17,B31,C44
`Chr2:74838857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B93,C48,C78
`Chr2:74838874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B137,B51,B52,B81
`Chr2:74838987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr2:74838989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C46
`Chr2:74839037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B137,B51,B52,B81
`Chr2:74839041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B70,B74,C62,C83
`Chr2:74839088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:74840763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:74840773`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:74840843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr2:74840864`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792706.1

518 aa

259

518

B56

PF01603 B56 73-485 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792706.1`	Pfam	`PF01603`	B56	Repeat	73	485	8.2e-179	595.6	Protein phosphatase 2A regulatory B subunit (B56 family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936723.1
GATCATTATTTTTCTTGTACTAAAAAATGAGGAGTTTTTAAAATGAGTAAAATAAAACTTTGTACATTATTTTTTTCAAGAGAAAAATCGAAATAATGTACAATATTTTCGTAAAGTTCATCATTTTGCAAATTAAACTAATGTTGTATGTGTTGTTTCCTTTCTTCATAAATGAATAAAATAAAAATATGTTATGACACTCATAGATCCCTTTTTTTTTTAAGGGAAAAATCGGCTAGATCTTGAAATTTTAATTTCCA...

CDS

1 records

下载 CDS FASTA

LOC131009410
ATGATTAAACAAATTTTCGGCAAGCTTCCGAAGAAGCAATCGTCGAAGTTGTCACAGTACGATTCGAGCAATAACGACGCCTCAATTCTCGATTTGAATTCGAATTCGGTGAATCTGGGCCCTCCCCTGCCCGCAATCAATGGGGCCTCTCCCCCGGCGGCGGCGGCGGTCCGAGGGAGCCCACCATTGTTGAATTACGTGGCTGCTTGCGAGGCGTTGCCAAGCTTGCGCGACGCCCCGAGCTCGGAAAGGCAGAATCT...

Protein

1 records

下载 Protein FASTA

XP_057792706.1
MIKQIFGKLPKKQSSKLSQYDSSNNDASILDLNSNSVNLGPPLPAINGASPPAAAAVRGSPPLLNYVAACEALPSLRDAPSSERQNLFIRKLNLCCVVFDFTDSSLNVSEKDAKRRVLLELVEYLSLVNSKFNEVVMNEITKMLVANLFRALPSSNPDSKLVGEVYDPEDDEPVVEPAWPHLQIVYEFFLRFVSSSETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYHFM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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