Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005453

染色体: Chr02 坐标: 74867544-74873718 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005453
名称SmilChr02G005453
描述uncharacterized SmilChr02G005453
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向74867544 - 74873718 / +

ID 对照

NCBI Gene IDLOC131009414
GeneID131009414
locus_tag-
NCBI NameLOC131009414
原始查询SmilChr02G005453

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述G1/S-specific cyclin-E protein [Source:NCBI gene (formerly Entrezgene);Acc:817859]; symbol=AT2G32970; hit=AT2G32970; species=arabidopsis; confidence=high
产物G1/S-specific cyclin-E protein [Source:NCBI gene (formerly Entrezgene);Acc:817859]; symbol=AT2G32970; hit=AT2G32970; species=arabidopsis; confidence=high
ArabidopsisAT2G32970 (AT2G32970)
G1/S-specific cyclin-E protein [Source:NCBI gene (formerly Entrezgene);Acc:817859]
identity=49.3; qcov=1.01; evalue=0; confidence=high
RiceOs02g0771800
-
identity=46; qcov=1.01; evalue=0; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131009414

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus membrane 核膜 1.00000 XP_057792711.1
2 Endoplasmic reticulum 内质网 1.00000 XP_057792711.1
3 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057792711.1
4 Nucleus inner membrane Nucleus inner membrane 0.80000 XP_057792711.1
5 Nucleus 细胞核 0.00000 XP_057792711.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:74868851 G A EMS_canonical_SNV CDS_variant 1 C15
Chr2:74869042 G A EMS_canonical_SNV CDS_variant 1 B114
Chr2:74869058 G A EMS_canonical_SNV CDS_variant 1 C2
Chr2:74869151 C T EMS_canonical_SNV CDS_variant 5 B27,B72,C37,C73,D2
Chr2:74869235 G A EMS_canonical_SNV CDS_variant 2 B2,B24
Chr2:74869484 C T EMS_canonical_SNV CDS_variant 4 A3,B28,B93,C48
Chr2:74869505 C T EMS_canonical_SNV CDS_variant 4 B124,C2,C6,C68
Chr2:74869519 C T EMS_canonical_SNV CDS_variant 2 A4,C80
Chr2:74869534 C T EMS_canonical_SNV CDS_variant 4 B124,C2,C59,C6
Chr2:74870323 C T EMS_canonical_SNV CDS_variant 1 C80
Chr2:74870435 C T EMS_canonical_SNV CDS_variant 1 B4
Chr2:74870548 C T EMS_canonical_SNV CDS_variant 2 A4,C80

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009096441.1
CCCCTCTCTCTCTCTCTCTCTCTCTCATAACTGCGCGATTCACGTGCCCCTGATTTTCCGACGATCCACAATCCATTTTCACGTCTCTCGCTACAAAACTCATGCAAATCTTCAACTCCTATATTTTCTCTCCACACACATCAACGGCGGGCCTTCATTACCTCTGCCGAAGCTAAGAAGCTGCGATTCTCAGCATCTAATTCAGCTCGCACCGTAAAAGCAGATATCTGCTCGATCGCGACGCTCAATATCTGATCAAA...
XR_009096442.1
TGCAGTCTTACCTTTCACATCTCCACTTATTTCTAGCATCAGAGAGTGGGAATTTCTATATCTTGGTGGACAATAGGCCGTGGTTGAAAGATCTCGCGTCTCTATCTACTCACTGGTGGCAATTGATGGTTACTAAGGTTGTCCCCATTCGCGAACACAAGGGGGAAGAAGGAAAGAAAGATGACTGAAGAGCTTTCAGAGTTGCAGGCTTCTTCCCCACCACCTACCAGGAAATTAAGAATTCTCCGAGAGTGGTTCCA...

CDS

1 records

下载 CDS FASTA
LOC131009414
ATGGCGAAAGGAGAAAAGGAACGCTGCGTCTTTCCCTTGACGAGTTTGCAAATTGGGGATTTGCAGTCTTACCTTTCACATCTCCACTTATTTCTAGCATCAGAGAGTGGGAATTTCTATATCTTGGTGGACAATAGGCCGTGGTTGAAAGATCTCGCGTCTCTATCTACTCACTGGTGGCAATTGATGGTTACTAAGTCCAGGTTGTCCCCATTCGCGAACACAAGGGGGAAGAAGGAAAGAAAGATGACTGAAGAGCT...

Protein

1 records

下载 Protein FASTA
XP_057792711.1
MAKGEKERCVFPLTSLQIGDLQSYLSHLHLFLASESGNFYILVDNRPWLKDLASLSTHWWQLMVTKSRLSPFANTRGKKERKMTEELSELQASSPPPTRKLRILREWFHVIDAVVVSRKDALLPVKKLTNSLIANGLIQRTLYGFIVFEVAWSNVRGINYLNELQTDTSLAIEAKIMRRWEFDSIAQAVRSIASWFPGTMKEQILLKKHLDATLGYVYYDAQESFPETIEADGNDAISDATHAGNETSCSPDHTPSVCPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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