Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005457`

染色体: Chr02 坐标: 74889409-74896486 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005457`
名称	SmilChr02G005457
描述	protein argonaute 16
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74889409 - 74896486 / `+`

ID 对照

NCBI Gene ID	`LOC131009418`
GeneID	`131009418`
locus_tag	`-`
NCBI Name	`LOC131009418`
原始查询	`SmilChr02G005457`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein argonaute 16
产物	protein argonaute 16
Arabidopsis	`AT2G32940` (AGO6) Argonaute family protein [Source:NCBI gene (formerly Entrezgene);Acc:817856] identity=65; qcov=0.976; evalue=0; confidence=high
Rice	`Os04g0151800` (OsAGO4b) - identity=63; qcov=0.979; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing)
KEGG	-
Pfam	PF02170 (PAZ); PF02171 (Piwi); PF08699 (ArgoL1); PF16486 (ArgoN); PF16487 (ArgoMid); PF16488 (ArgoL2)
InterPro	-
eggNOG	-
NR	GeneID:131009418

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057792714.1`
2	Cytoplasmic granule	细胞质颗粒	1.00000	`XP_057792714.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057792714.1`
4	Nucleus	细胞核	0.60000	`XP_057792714.1`
5	P-body	P-body	0.40000	`XP_057792714.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74890510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:74890562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,D11
`Chr2:74891405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B10,B55
`Chr2:74892527`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr2:74892973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,C28,C75
`Chr2:74892994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr2:74893085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B2,B53,C8
`Chr2:74894693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B16,B28,B94,C48
`Chr2:74895255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr2:74895316`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B114,B126,C53
`Chr2:74895673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B2,B53,C8
`Chr2:74896039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792714.1

894 aa

447

894

ArgoN

ArgoL1

PAZ

ArgoL2

ArgoMid

Piwi

PF16486 ArgoN 40-197 aa PF08699 ArgoL1 209-257 aa PF02170 PAZ 264-394 aa PF16488 ArgoL2 404-449 aa PF16487 ArgoMid 457-538 aa PF02171 Piwi 548-855 aa

XP_057792715.1

894 aa

447

894

ArgoN

ArgoL1

PAZ

ArgoL2

ArgoMid

Piwi

PF16486 ArgoN 40-197 aa PF08699 ArgoL1 209-257 aa PF02170 PAZ 264-394 aa PF16488 ArgoL2 404-449 aa PF16487 ArgoMid 457-538 aa PF02171 Piwi 548-855 aa

XP_057792717.1

893 aa

446

893

ArgoN

ArgoL1

PAZ

ArgoL2

ArgoMid

Piwi

PF16486 ArgoN 40-196 aa PF08699 ArgoL1 208-256 aa PF02170 PAZ 263-393 aa PF16488 ArgoL2 403-448 aa PF16487 ArgoMid 456-537 aa PF02171 Piwi 547-854 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792714.1`	Pfam	`PF16486`	ArgoN	Domain	40	197	2.7e-31	109.6	N-terminal domain of argonaute
`XP_057792714.1`	Pfam	`PF08699`	ArgoL1	Domain	209	257	1.7e-14	53.9	Argonaute linker 1 domain
`XP_057792714.1`	Pfam	`PF02170`	PAZ	Domain	264	394	1.1e-30	106.8	PAZ domain
`XP_057792714.1`	Pfam	`PF16488`	ArgoL2	Family	404	449	2.3e-11	44.4	Argonaute linker 2 domain
`XP_057792714.1`	Pfam	`PF16487`	ArgoMid	Domain	457	538	4.6e-09	37.1	Mid domain of argonaute
`XP_057792714.1`	Pfam	`PF02171`	Piwi	Domain	548	855	2.5e-105	352.8	Piwi domain
`XP_057792715.1`	Pfam	`PF16486`	ArgoN	Domain	40	197	2.7e-31	109.6	N-terminal domain of argonaute
`XP_057792715.1`	Pfam	`PF08699`	ArgoL1	Domain	209	257	1.7e-14	53.9	Argonaute linker 1 domain
`XP_057792715.1`	Pfam	`PF02170`	PAZ	Domain	264	394	1.1e-30	106.8	PAZ domain
`XP_057792715.1`	Pfam	`PF16488`	ArgoL2	Family	404	449	2.3e-11	44.4	Argonaute linker 2 domain
`XP_057792715.1`	Pfam	`PF16487`	ArgoMid	Domain	457	538	4.6e-09	37.1	Mid domain of argonaute
`XP_057792715.1`	Pfam	`PF02171`	Piwi	Domain	548	855	2.5e-105	352.8	Piwi domain
`XP_057792717.1`	Pfam	`PF16486`	ArgoN	Domain	40	196	2.3e-31	109.8	N-terminal domain of argonaute
`XP_057792717.1`	Pfam	`PF08699`	ArgoL1	Domain	208	256	1.7e-14	53.9	Argonaute linker 1 domain
`XP_057792717.1`	Pfam	`PF02170`	PAZ	Domain	263	393	1.1e-30	106.8	PAZ domain
`XP_057792717.1`	Pfam	`PF16488`	ArgoL2	Family	403	448	2.3e-11	44.4	Argonaute linker 2 domain
`XP_057792717.1`	Pfam	`PF16487`	ArgoMid	Domain	456	537	4.6e-09	37.1	Mid domain of argonaute
`XP_057792717.1`	Pfam	`PF02171`	Piwi	Domain	547	854	2.5e-105	352.8	Piwi domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936731.1
AATTCCGAAGCGACCTACTTCTCCTTTCCCTCCATTTTCTCTCTCTTCATAGGGGAGTGAAGAGTAGTGAGAGAGAAAATCAGTCAGCAGCATTCGCTGCAAAAAAGCACACTTCTCCCTTTGCCGCTGTGTGTCAATTTCCGCTCTCGCGCTGGGAATTTCAGCTCGGTTTCCTCGGAATATCATCTCTCCGTCCACTCATTGAAAGTAGGAATGGAAAAGCCACCACCATTGCCAACTATACAGGAAAGTTTGAAGGT...

XM_057936734.1
ACTTCTCCTTTCCCTCCATTTTCTCTCTCTTCATAGGGGAGTGAAGAGTAGTGAGAGAGAAAATCAGTCAGCAGCATTCGCTGCAAAAAAGCACACTTCTCCCTTTGCCGCTGTGTGTCAATTTCCGCTCTCGCGCTGGGAATTTCAGCTCGGTTTCCTCGGAATATCATCTCTCCGTCCACTCATTGAAAGTAGGAATGGAAAAGCCACCACCATTGCCAACTATACAGGAAAGTTTGAAGGTAGAAGGTGCTGAGTCT...

CDS

3 records

下载 CDS FASTA

LOC131009418
ATGGAAAAGCCACCACCATTGCCAACTATACAGGAAAGTTTGAAGGTAGAAGGTGCTGAGTCTGCTGACCTTCCTGAGAGGTCCATAATGATAAGACCTGGATTTGGGACTTCTGGAAAACGTGTCCCTTTGCTTGCAAATCACTTCAAAGTTTCCATCAAAAATCCAAATCAGATTTTTTACCAATACAGTGTTTCCATAAGTTATGAGGATAATAAGGCTGTTGACGGCAAGGTAATTGGGAGGAAAGTCATTGATAA...

Protein

3 records

下载 Protein FASTA

XP_057792714.1
MEKPPPLPTIQESLKVEGAESADLPERSIMIRPGFGTSGKRVPLLANHFKVSIKNPNQIFYQYSVSISYEDNKAVDGKVIGRKVIDKLYQTYSSEFDKKRFAYDGDKSLFTVGPLPQNKFEYTVILEESTAKSSGNPSDNGCSTEPSKKSKHSLRSKTFKVEISYAAKIPLKSLSLALKGAEIEYVQDALRVLDIILRQQAAKRGCLLVRQSFFHDDPLMFTDVGGGVTGVRGLHSSFRPTLDGLSLNMDVSTTMILKPG...

XP_057792715.1
MEKPPPLPTIQESLKVEGAESADLPERSIMIRPGFGTSGKRVPLLANHFKVSIKNPNQIFYQYSVSISYEDNKAVDGKVIGRKVIDKLYQTYSSEFDKKRFAYDGDKSLFTVGPLPQNKFEYTVILEESTAKSSGNPSDNGCSTEPSKKSKHSLRSKTFKVEISYAAKIPLKSLSLALKGAEIEYVQDALRVLDIILRQQAAKRGCLLVRQSFFHDDPLMFTDVGGGVTGVRGLHSSFRPTLDGLSLNMDVSTTMILKPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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