当前解析结果
SmilChr02G005460| 统一新 Gene ID | SmilChr02G005460 |
|---|---|
| 名称 | SmilChr02G005460 |
| 描述 | triacylglycerol lipase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74911602 - 74916578 / + |
| NCBI Gene ID | LOC131009422 |
|---|---|
| GeneID | 131009422 |
| locus_tag | - |
| NCBI Name | LOC131009422 |
| 原始查询 | SmilChr02G005460 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | triacylglycerol lipase 2-like |
| 产物 | triacylglycerol lipase 2-like |
| Arabidopsis | AT5G14180 (MPL1)Myzus persicae-induced lipase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831268] identity=48; qcov=1.02; evalue=1.96e-138; confidence=high |
| Rice | Os04g0280600 (AM20)- identity=52.2; qcov=1.06; evalue=1.06e-136; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00561 (Abhydrolase_1); PF04083 (Abhydro_lipase); PF12146 (Hydrolase_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009422 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057792722.1 |
| 2 | Lysosome | 溶酶体 | 0.20000 | XP_057792722.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057792722.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792722.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792722.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74911617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr2:74911641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr2:74912296 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr2:74912299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:74912329 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr2:74912330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B132,B60,C37,C47 |
Chr2:74912501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,B53 |
Chr2:74912525 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr2:74912582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B131,B31,C3 |
Chr2:74913474 |
C |
CA |
1bp_insertion | frameshift_variant | 6 | A25,B128,B58,C16,C45,C53 |
Chr2:74913495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:74913503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B138,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792722.1PF04083
Abhydro_lipase 44-103 aa
PF00561
Abhydrolase_1 85-361 aa
PF12146
Hydrolase_4 109-363 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792722.1 |
Pfam | PF04083 |
Abhydro_lipase | Family | 44 | 103 | 6.9e-21 | 74.3 | Partial alpha/beta-hydrolase lipase region |
XP_057792722.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 85 | 361 | 2.6e-14 | 54.2 | alpha/beta hydrolase fold |
XP_057792722.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 109 | 363 | 4.8e-08 | 33.3 | Serine aminopeptidase, S33 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。