Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005461

染色体: Chr02 坐标: 74917586-74920857 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005461
名称SmilChr02G005461
描述triacylglycerol lipase 2-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向74917586 - 74920857 / +

ID 对照

NCBI Gene IDLOC131009421
GeneID131009421
locus_tag-
NCBI NameLOC131009421
原始查询SmilChr02G005461

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述triacylglycerol lipase 2-like
产物triacylglycerol lipase 2-like
ArabidopsisAT5G14180 (MPL1)
Myzus persicae-induced lipase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831268]
identity=49.9; qcov=0.988; evalue=1.29e-141; confidence=high
RiceOs04g0280600 (AM20)
-
identity=55; qcov=1.07; evalue=1.51e-148; confidence=high
GOGO:0006629 (lipid metabolic process); GO:0016788 (hydrolase activity, acting on ester bonds)
KEGGsmil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage))
PfamPF00561 (Abhydrolase_1); PF04083 (Abhydro_lipase)
InterPro-
eggNOG-
NRGeneID:131009421

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Secreted 分泌到胞外 1.00000 XP_057792721.1
2 Lysosome 溶酶体 0.20000 XP_057792721.1
3 Nucleus 细胞核 0.00000 XP_057792721.1
4 Chromosome 染色体 0.00000 XP_057792721.1
5 Centromere 着丝粒 0.00000 XP_057792721.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:74917667 G A EMS_canonical_SNV CDS_variant 2 B64,C55
Chr2:74918324 C T EMS_canonical_SNV CDS_variant 1 C73
Chr2:74918327 C T EMS_canonical_SNV CDS_variant 3 B26,B90,B92
Chr2:74918340 C T EMS_canonical_SNV CDS_variant 3 B100,B93,D10
Chr2:74918345 C T EMS_canonical_SNV CDS_variant 5 A13,A23,B104,B125,C58
Chr2:74918379 C T EMS_canonical_SNV CDS_variant 4 A11,B69,B78,D6
Chr2:74918648 G A EMS_canonical_SNV CDS_variant 2 B64,C55
Chr2:74918704 C T EMS_canonical_SNV CDS_variant 3 C4,C78,D4
Chr2:74918705 G A EMS_canonical_SNV CDS_variant 1 C18
Chr2:74919010 G A EMS_canonical_SNV CDS_variant 1 B53
Chr2:74919039 C T EMS_canonical_SNV CDS_variant 1 C82
Chr2:74919371 G A EMS_canonical_SNV CDS_variant 5 B108,B138,B29,C13,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792721.1
402 aa
N
1
201
402
Abhydro_lipase
Abhydrolase_1
C
PF04083 Abhydro_lipase 44-104 aa PF00561 Abhydrolase_1 87-363 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792721.1 Pfam PF04083 Abhydro_lipase Family 44 104 6.4e-21 74.4 Partial alpha/beta-hydrolase lipase region
XP_057792721.1 Pfam PF00561 Abhydrolase_1 Domain 87 363 6.1e-15 56.3 alpha/beta hydrolase fold

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936738.1
ACAGAACATATATATTTTAGTGTGACAAAAATGGCGATGACGACAGCGACATCCTTAATTTTGTTGCAGCTTCTGTTTGCTGTCTTAGCAGCTGGTGGAAGAACAAAGATTTCAAGGGAATTGGAATCCAATAATTTTGGAGATGGAATCTGTCAGCTTATGGTGGAGACGCAGGGCTATAGCTGTGAGGAACATAAGGTGACAACAAAAGATGGATACATCTTGAGCTTGCAGAGGATTCCGACGGGGCGGTCGGGCGG...

CDS

1 records

下载 CDS FASTA
LOC131009421
ATGGCGATGACGACAGCGACATCCTTAATTTTGTTGCAGCTTCTGTTTGCTGTCTTAGCAGCTGGTGGAAGAACAAAGATTTCAAGGGAATTGGAATCCAATAATTTTGGAGATGGAATCTGTCAGCTTATGGTGGAGACGCAGGGCTATAGCTGTGAGGAACATAAGGTGACAACAAAAGATGGATACATCTTGAGCTTGCAGAGGATTCCGACGGGGCGGTCGGGCGGCGCAGGGAAGAAGAAGGGGGGGCCGAAGCC...

Protein

1 records

下载 Protein FASTA
XP_057792721.1
MAMTTATSLILLQLLFAVLAAGGRTKISRELESNNFGDGICQLMVETQGYSCEEHKVTTKDGYILSLQRIPTGRSGGAGKKKGGPKPPVLLQHGLMSDAMTWLAVSPDESLGFILADNGFDVWLGNVRGTNYSSSHTSLNPNDPEYWDWSWDELVAYDLPAMFEYVHGQTGQKLHYVGHSLGTLMAFGAFSRHEVLSMVRSAALLSPIAYMGQMPSPLARAAADIFMAEALYWLGLKEFAPGGGAVSKLVAEICSQIDCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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