Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005467`

染色体: Chr02 坐标: 74959871-74961706 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005467`
名称	SmilChr02G005467
描述	uncharacterized SmilChr02G005467
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74959871 - 74961706 / `-`

ID 对照

NCBI Gene ID	`LOC131009429`
GeneID	`131009429`
locus_tag	`-`
NCBI Name	`LOC131009429`
原始查询	`SmilChr02G005467`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839045]; symbol=AT1G24290; hit=AT1G24290; species=arabidopsis; confidence=high
产物	AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839045]; symbol=AT1G24290; hit=AT1G24290; species=arabidopsis; confidence=high
Arabidopsis	`AT1G24290` (AT1G24290) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839045] identity=62.6; qcov=0.991; evalue=0; confidence=high
Rice	`Os12g0176500` (RFC2) - identity=25.7; qcov=0.514; evalue=1.96e-11; confidence=low
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006261 (DNA-templated DNA replication); GO:0006282 (regulation of DNA repair); GO:0008047 (enzyme activator activity); GO:0016887 (ATP hydrolysis activity); GO:0017116 (single-stranded DNA helicase activity)
KEGG	-
Pfam	PF00004 (AAA); PF00158 (Sigma54_activat); PF00627 (UBA); PF01078 (Mg_chelatase); PF05496 (RuvB_N); PF07728 (AAA_5); PF12002 (MgsA_C); PF16193 (AAA_assoc_2); PF22562 (UBA_7)
InterPro	-
eggNOG	-
NR	GeneID:131009429

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792730.1`
2	Nucleolus	核仁	0.20000	`XP_057792730.1`
3	Chromosome	染色体	0.00000	`XP_057792730.1`
4	Centromere	着丝粒	0.00000	`XP_057792730.1`
5	Chromatin	染色质	0.00000	`XP_057792730.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74960039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B75,C59,C61
`Chr2:74960048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C72
`Chr2:74960067`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr2:74960135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,B17
`Chr2:74960189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:74960210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr2:74960224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr2:74960234`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C42
`Chr2:74960261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B105,B47,B67
`Chr2:74960276`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,B68,C1,D2
`Chr2:74960289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:74960329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B53,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792730.1

545 aa

272

545

UBA

UBA_7

RuvB_N

Mg_chelatase

Sigma54_activat

AAA_5

AAA

AAA_assoc_2

MgsA_C

PF00627 UBA 4-38 aa PF22562 UBA_7 4-43 aa PF05496 RuvB_N 126-255 aa PF01078 Mg_chelatase 149-256 aa PF00158 Sigma54_activat 157-260 aa PF07728 AAA_5 159-253 aa PF00004 AAA 159-276 aa PF16193 AAA_assoc_2 312-392 aa PF12002 MgsA_C 393-541 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792730.1`	Pfam	`PF00627`	UBA	Domain	4	38	2.4e-09	37.5	UBA/TS-N domain
`XP_057792730.1`	Pfam	`PF22562`	UBA_7	Domain	4	43	1.6e-09	38.2	UBA-like domain
`XP_057792730.1`	Pfam	`PF05496`	RuvB_N	Domain	126	255	2.1e-09	38.1	Holliday junction DNA helicase RuvB P-loop domain
`XP_057792730.1`	Pfam	`PF01078`	Mg_chelatase	Domain	149	256	2.3e-07	31.2	Magnesium chelatase, subunit ChlI
`XP_057792730.1`	Pfam	`PF00158`	Sigma54_activat	Domain	157	260	5.8e-07	30.1	Sigma-54 interaction domain
`XP_057792730.1`	Pfam	`PF07728`	AAA_5	Domain	159	253	6e-08	33.5	AAA domain (dynein-related subfamily)
`XP_057792730.1`	Pfam	`PF00004`	AAA	Domain	159	276	5.2e-16	60.0	ATPase family associated with various cellular activities (AAA)
`XP_057792730.1`	Pfam	`PF16193`	AAA_assoc_2	Family	312	392	1.8e-25	89.8	AAA C-terminal domain
`XP_057792730.1`	Pfam	`PF12002`	MgsA_C	Domain	393	541	9.5e-60	202.0	MgsA AAA+ ATPase C terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936747.1
TGCGGGAAAAAAAGAGTATCGCTTCGCCTCCTTTTTAAGAGAGTGAAAGCAATTTTGAGCTTTTCATACCAAAAAAATAAAAATAAAATAAAAAAAATGGAAGCGGAGGCAGCACTTCAGCAGCTCATAGGCATGGGCTTCGCCGCCGACTCCGCCGCCCAAGCCCTGGCCGCGTGCGGCGGCGATATCCACAAAGCCACCGACTGGCTCCTCCTCAACCACGACCGCCGCCACCCTCCTCAAACTCCACCGCCGCCGCT...

CDS

1 records

下载 CDS FASTA

LOC131009429
ATGGAAGCGGAGGCAGCACTTCAGCAGCTCATAGGCATGGGCTTCGCCGCCGACTCCGCCGCCCAAGCCCTGGCCGCGTGCGGCGGCGATATCCACAAAGCCACCGACTGGCTCCTCCTCAACCACGACCGCCGCCACCCTCCTCAAACTCCACCGCCGCCGCTTGATTCCACGCCTCCCAATGTCCAGCCCAAAATCAACCGATTCTTCAACCTCAACCCCTCCAAAAAAGATCCCAAAAACCACCCAAAAACCCTCCA...

Protein

1 records

下载 Protein FASTA

XP_057792730.1
MEAEAALQQLIGMGFAADSAAQALAACGGDIHKATDWLLLNHDRRHPPQTPPPPLDSTPPNVQPKINRFFNLNPSKKDPKNHPKTLQQSEENEEIEPPPNLIHRRKRPRSPEIQETAAAAPLSERMRPRVLDEVVGQDHLLAGDSLLRSAAAAGRLPSVILWGPPGTGKTSIARALVGSCPASASYRFVSLSAVACGVKEVREAVEAARRSKISSTAAAGGKRTVLFLDEVHRFNKAQQDSFLPVIEDGSIVFVGATTEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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