当前解析结果
SmilChr02G005472| 统一新 Gene ID | SmilChr02G005472 |
|---|---|
| 名称 | SmilChr02G005472 |
| 描述 | anthocyanidin 3-O-glucosyltransferase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74981743 - 74983403 / + |
| NCBI Gene ID | LOC131009435 |
|---|---|
| GeneID | 131009435 |
| locus_tag | - |
| NCBI Name | LOC131009435 |
| 原始查询 | SmilChr02G005472 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | anthocyanidin 3-O-glucosyltransferase 2-like |
| 产物 | anthocyanidin 3-O-glucosyltransferase 2-like |
| Arabidopsis | AT3G21760 (HYR1)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821730] identity=45.7; qcov=1.02; evalue=3.34e-130; confidence=high |
| Rice | Os07g0564100 (OJ1112_E08.105)- identity=35.8; qcov=1.01; evalue=9.21e-82; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009435 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057792737.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057792737.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057792737.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792737.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792737.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74981970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr2:74982048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A14,A18,B110,B115 |
Chr2:74982099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr2:74982118 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C51 |
Chr2:74982118 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C51 |
Chr2:74982119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B11,B13,B53,C37 |
Chr2:74982132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr2:74982145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C80 |
Chr2:74982224 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,B78 |
Chr2:74982269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B12,B138,B28,C77 |
Chr2:74982284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr2:74982294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792737.1PF00201
UDPGT 255-396 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792737.1 |
Pfam | PF00201 |
UDPGT | Family | 255 | 396 | 2.6e-20 | 73.4 | UDP-glucoronosyl and UDP-glucosyl transferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。