当前解析结果
SmilChr02G005480| 统一新 Gene ID | SmilChr02G005480 |
|---|---|
| 名称 | SmilChr02G005480 |
| 描述 | nicotianamine synthase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75009909 - 75012441 / - |
| NCBI Gene ID | LOC131009460 |
|---|---|
| GeneID | 131009460 |
| locus_tag | - |
| NCBI Name | LOC131009460 |
| 原始查询 | SmilChr02G005480 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nicotianamine synthase-like |
| 产物 | nicotianamine synthase-like |
| Arabidopsis | AT1G56430 (NAS4)nicotianamine synthase 4 [Source:NCBI gene (formerly Entrezgene);Acc:842096] identity=58.6; qcov=0.734; evalue=2.84e-108; confidence=high |
| Rice | Os03g0307200 (NAS2)- identity=58.7; qcov=0.723; evalue=3.9e-96; confidence=high |
| GO | GO:0016020 (membrane); GO:0030001 (metal ion transport); GO:0030410 (nicotianamine synthase activity); GO:0030418 (nicotianamine biosynthetic process); GO:0046873 (metal ion transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02535 (Zip); PF03059 (NAS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009460 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057792780.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057792780.1 |
| 3 | Lipid droplet | 脂滴 | 0.40000 | XP_057792780.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057792780.1 |
| 5 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057792780.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75010087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,C32,C68 |
Chr2:75010095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr2:75010118 |
T |
TCG |
2bp_insertion | frameshift_variant | 18 | B121,B122,B125,B30,B36,B50,B56,B59,B6,B8,B89,C11,C17,C3,C49,C63,C69,D8 |
Chr2:75010127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:75010128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C26,C85 |
Chr2:75010148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr2:75010308 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B140,B45 |
Chr2:75010323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B139,B140,B45 |
Chr2:75010397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,C2,C32,C68 |
Chr2:75010398 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B59,C17,C3,C63 |
Chr2:75010413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:75010423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792780.1PF02535
Zip 5-88 aa
PF03059
NAS 97-364 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792780.1 |
Pfam | PF02535 |
Zip | Family | 5 | 88 | 1.3e-11 | 45.1 | ZIP Zinc transporter |
XP_057792780.1 |
Pfam | PF03059 |
NAS | Family | 97 | 364 | 1.6e-110 | 369.5 | Nicotianamine synthase protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。