Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005484`

染色体: Chr02 坐标: 75039542-75042849 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005484`
名称	SmilChr02G005484
描述	choline-phosphate cytidylyltransferase 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75039542 - 75042849 / `-`

ID 对照

NCBI Gene ID	`LOC131009465`
GeneID	`131009465`
locus_tag	`-`
NCBI Name	`LOC131009465`
原始查询	`SmilChr02G005484`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	choline-phosphate cytidylyltransferase 2-like
产物	choline-phosphate cytidylyltransferase 2-like
Arabidopsis	`AT2G32260` (CCT1) phosphorylcholine cytidylyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:817786] identity=74.8; qcov=0.912; evalue=9.07e-157; confidence=high
Rice	`Os02g0173500` - identity=79.9; qcov=0.767; evalue=7.97e-148; confidence=high
GO	GO:0004105 (choline-phosphate cytidylyltransferase activity); GO:0006657 (CDP-choline pathway); GO:0031210 (phosphatidylcholine binding)
KEGG	smil00440 (Phosphonate and phosphinate metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01467 (CTP_transf_like)
InterPro	-
eggNOG	-
NR	GeneID:131009465

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792789.1`
2	Cytoplasm	细胞质	1.00000	`XP_057792790.1`
3	Nucleus	细胞核	0.60000	`XP_057792790.1`
4	Chromosome	染色体	0.00000	`XP_057792789.1`
5	Centromere	着丝粒	0.00000	`XP_057792789.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75039874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B31,B37,C60,D2
`Chr2:75039898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B24,C20
`Chr2:75039909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A6,B31,B37,C60,D2
`Chr2:75039919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr2:75040005`	`CG`	`C`	1bp_deletion	frameshift_variant	5	B16,B44,B67,C40,C81
`Chr2:75040005`	`CG`	`C`	1bp_deletion	CDS_variant	5	B16,B44,B67,C40,C81
`Chr2:75040006`	`GGA`	`G`	2bp_deletion	frameshift_variant	11	A11,A23,B108,B110,B75,C13,C2,C23,C32,C39,C68
`Chr2:75040010`	`A`	`AAG`	2bp_insertion	frameshift_variant	74	A1,A10,A16,A18,A23,A24,B10,B101,B104,B106,B109,B119,B12,B120,B123,B127,B128,B131,B133,B135,B137,B138,B14,B140,B15,B25,B26,B32,B4,B41,B42,B43,B47,B48,B51,B52,B53,B57,B58,B59,B6,B61,B62,B63,B69,B79,B81,B84,B95,C14,C17,C24,C29,C3,C35,C40,C45,C48,C49,C5,C54,C57,C59,C61,C63,C72,C78,C79,C81,C82,C85,C87,D11,D7
`Chr2:75040011`	`A`	`AAT`	2bp_insertion	frameshift_variant	28	A13,A2,B1,B109,B119,B126,B129,B139,B2,B23,B24,B32,B41,B45,B57,B73,B80,B99,C10,C20,C35,C38,C39,C43,C51,C52,C73,D4
`Chr2:75040012`	`A`	`AT`	1bp_insertion	frameshift_variant	17	A15,B11,B117,B123,B124,B22,B59,B68,B82,B89,C14,C27,C41,C43,C50,C55,D1
`Chr2:75040014`	`A`	`AAT`	2bp_insertion	frameshift_variant	20	A5,A6,A7,B104,B108,B113,B135,B21,B40,B64,B72,B9,B90,B92,B99,C4,C78,C80,D1,D4
`Chr2:75040019`	`TGA`	`T`	2bp_deletion	frameshift_variant	9	B136,B34,B48,B65,C42,C55,C70,C8,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792789.1

352 aa

176

352

CTP_transf_like

PF01467 CTP_transf_like 42-171 aa

XP_057792790.1

318 aa

159

318

CTP_transf_like

PF01467 CTP_transf_like 42-171 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792789.1`	Pfam	`PF01467`	CTP_transf_like	Domain	42	171	2.8e-33	115.7	Cytidylyltransferase-like
`XP_057792790.1`	Pfam	`PF01467`	CTP_transf_like	Domain	42	171	2.7e-33	115.7	Cytidylyltransferase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936807.1
AATTCTGAAATAGAATGATCAAAATAAGATTCTGCTCGGGCGGTGGCAGCAGCATCGCGGTATATTCGTTTTTCGTTTATAATTAAAGCAGCTGAAAAAAATTCAAGTAAAAAAAAATTTGCAAAAAAAAAAAAAAAAAAAAAAAGAGAAACCGCCGACGGCAGCGATGGTCGAGAGCGGTGTTGCTGCGGCGGCGGAGCAGAGACAGGCCACCACCGTGAACACAGCTGAGAGCACCAAGAGCGACGACGTGAACGGTC...

XM_057936806.1
AATTCTGAAATAGAATGATCAAAATAAGATTCTGCTCGGGCGGTGGCAGCAGCATCGCGGTATATTCGTTTTTCGTTTATAATTAAAGCAGCTGAAAAAAATTCAAGTAAAAAAAAATTTGCAAAAAAAAAAAAAAAAAAAAAAAGAGAAACCGCCGACGGCAGCGATGGTCGAGAGCGGTGTTGCTGCGGCGGCGGAGCAGAGACAGGCCACCACCGTGAACACAGCTGAGAGCACCAAGAGCGACGACGTGAACGGTC...

CDS

2 records

下载 CDS FASTA

LOC131009465
ATGGTCGAGAGCGGTGTTGCTGCGGCGGCGGAGCAGAGACAGGCCACCACCGTGAACACAGCTGAGAGCACCAAGAGCGACGACGTGAACGGTCCTTCCTCATCTGACCGCCCAATTCGTGTCTACGCCGACGGGATCTACGATCTCTTTCACTTCGGCCACGCTCGCTCCCTCGAGCAAGCTAAAAAATCGTTTCCGAATACATACTTGCTAGTTGGATGCTGCAATGATGAGGTTACACACAAGTTCAAAGGCAAGAC...

Protein

2 records

下载 Protein FASTA

XP_057792789.1
MVESGVAAAAEQRQATTVNTAESTKSDDVNGPSSSDRPIRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEVTHKFKGKTVMTESERYESLRHCKWVDEVIPDAPWVIDQEFLDKHNIDYVAHDSLPYADASGAGNDVYEFVKAVGRFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKELNLSYVKEKRLRVNMRLRKLQEKVKEHQEKVGEKIQTVAKTATIHRNMWVENADRMVAGFLEMFEER...

XP_057792790.1
MVESGVAAAAEQRQATTVNTAESTKSDDVNGPSSSDRPIRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDEVTHKFKGKTVMTESERYESLRHCKWVDEVIPDAPWVIDQEFLDKHNIDYVAHDSLPYADASGAGNDVYEFVKAVGRFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKELNLSYVKEKRLRVNMRLRKLQEKVKEHQEKVGEKIQTVAKTATIHRNMWVENADRMVAGFLEMFEER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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