Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005489`

染色体: Chr02 坐标: 75065089-75070092 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005489`
名称	SmilChr02G005489
描述	protein FAR-RED ELONGATED HYPOCOTYL 3
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75065089 - 75070092 / `-`

ID 对照

NCBI Gene ID	`LOC131009446`
GeneID	`131009446`
locus_tag	`-`
NCBI Name	`LOC131009446`
原始查询	`SmilChr02G005489`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR-RED ELONGATED HYPOCOTYL 3
产物	protein FAR-RED ELONGATED HYPOCOTYL 3
Arabidopsis	`AT3G22170` (FHY3) far-red elongated hypocotyls 3 [Source:NCBI gene (formerly Entrezgene);Acc:821781] identity=60.3; qcov=1.01; evalue=0; confidence=high
Rice	`Os11g0681300` - identity=33.5; qcov=0.754; evalue=2.24e-116; confidence=low
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131009446

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792749.1`
2	Chromosome	染色体	0.00000	`XP_057792749.1`
3	Centromere	着丝粒	0.00000	`XP_057792749.1`
4	Chromatin	染色质	0.00000	`XP_057792749.1`
5	Telomere	端粒	0.00000	`XP_057792749.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75066334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr2:75066883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,C14,C80
`Chr2:75066891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,C14,C80
`Chr2:75066894`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A15,C14,C80
`Chr2:75067048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B34,B91,C42,C55
`Chr2:75067119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr2:75067152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,C14,C42,C80
`Chr2:75067596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr2:75067598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B28,B94
`Chr2:75067743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:75067800`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:75067926`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,C14,C42,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792749.1

845 aa

422

845

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792750.1

845 aa

422

845

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792752.1

844 aa

422

844

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792753.1

844 aa

422

844

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792754.1

843 aa

422

843

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792755.1

843 aa

422

843

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792756.1

842 aa

421

842

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

XP_057792757.1

842 aa

421

842

FAR1

MULE

SWIM

PF03101 FAR1 88-190 aa PF10551 MULE 288-380 aa PF04434 SWIM 575-603 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792749.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792749.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.7e-24	86.1	MULE transposase domain
`XP_057792749.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.1	SWIM zinc finger
`XP_057792750.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792750.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.7e-24	86.1	MULE transposase domain
`XP_057792750.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.1	SWIM zinc finger
`XP_057792752.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792752.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.7e-24	86.1	MULE transposase domain
`XP_057792752.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.2	SWIM zinc finger
`XP_057792753.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792753.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.7e-24	86.1	MULE transposase domain
`XP_057792753.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.2	SWIM zinc finger
`XP_057792754.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792754.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.6e-24	86.1	MULE transposase domain
`XP_057792754.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.1	SWIM zinc finger
`XP_057792755.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792755.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.6e-24	86.1	MULE transposase domain
`XP_057792755.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.1	SWIM zinc finger
`XP_057792756.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792756.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.6e-24	86.1	MULE transposase domain
`XP_057792756.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.2	SWIM zinc finger
`XP_057792757.1`	Pfam	`PF03101`	FAR1	Domain	88	190	1.5e-25	90.4	FAR1 DNA-binding domain
`XP_057792757.1`	Pfam	`PF10551`	MULE	Domain	288	380	2.6e-24	86.1	MULE transposase domain
`XP_057792757.1`	Pfam	`PF04434`	SWIM	Domain	575	603	0.00013	22.2	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057936769.1
GAAGAGGAGGAGAGAGCCACGCGCTAGAGAGAGAAAAGGGCAGAGCGAGTGAGAGAGAGTGTTGAAGGAGAGCGAGTGGCAATCAAATCGAGAGAACCCTAATCTCCCAATTTGGGGGAAAACATCGTCGACTCGCCCAAACCCTCGCGTGGATTTGCAGTTCTGAAGATCCCTACTATAAAAATCGCAGGTTGCTACACAACACCTTATTGCAGGACAACGAGTTGTTGTCATGGATATAGATCTTAGGTTGCCTTCTG...

XM_057936770.1
GAAGAGGAGGAGAGAGCCACGCGCTAGAGAGAGAAAAGGGCAGAGCGAGTGAGAGAGAGTGTTGAAGGAGAGCGAGTGGCAATCAAATCGAGAGAACCCTAATCTCCCAATTTGGGGGAAAACATCGTCGACTCGCCCAAACCCTCGCGTGGATTTGCAGTTCTGAAGATCCCTACTATAAAAATCGCAGGTTGCTACACAACACCTTATTGCAGGACAACGAGTTGTTGTCATGGATATAGATCTTAGGTTGCCTTCTG...

CDS

8 records

下载 CDS FASTA

LOC131009446
ATGGATATAGATCTTAGGTTGCCTTCTGGAGAACATGATAAAGAATTAGAAGAGCCTAATGGAATTGTTAATATGCTAGATGGGGAAGAGAAGCCCCTCAATGTAGATGGAGTGGGTGAGAGTATGGGAGACGAGGATAAGTTGCATGTCGAAGATGGAGATGATGTGAATTCTCCGTTACCTGATATAGATTTCAAAGATGTGACAATTCTTGAGCCACTTCCTGGTATGGAATTTGGGTCTCATGGGGACGCCTATGC...

Protein

8 records

下载 Protein FASTA

XP_057792749.1
MDIDLRLPSGEHDKELEEPNGIVNMLDGEEKPLNVDGVGESMGDEDKLHVEDGDDVNSPLPDIDFKDVTILEPLPGMEFGSHGDAYAFYQEYARSVGFSTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSLNRPRSRQGSNQDAENATGRRACAKTDCKASMHVKRRSDGKWIIHRFEKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKSAVGLKHDSRSQFEKGRNMAMDAVEASAMLEFFVHMQTLNSNFFYAV...

XP_057792750.1
MDIDLRLPSGEHDKELEEPNGIVNMLDGEEKPLNVDGVGESMGDEDKLHVEDGDDVNSPLPDIDFKDVTILEPLPGMEFGSHGDAYAFYQEYARSVGFSTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSLNRPRSRQGSNQDAENATGRRACAKTDCKASMHVKRRSDGKWIIHRFEKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKSAVGLKHDSRSQFEKGRNMAMDAVEASAMLEFFVHMQTLNSNFFYAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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