当前解析结果
SmilChr02G005493| 统一新 Gene ID | SmilChr02G005493 |
|---|---|
| 名称 | SmilChr02G005493 |
| 描述 | uncharacterized SmilChr02G005493 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75088935 - 75096699 / + |
| NCBI Gene ID | LOC131009440 |
|---|---|
| GeneID | 131009440 |
| locus_tag | - |
| NCBI Name | LOC131009440 |
| 原始查询 | SmilChr02G005493 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | early endosome antigen [Source:NCBI gene (formerly Entrezgene);Acc:817784]; symbol=AT2G32240; hit=AT2G32240; species=arabidopsis; confidence=medium |
| 产物 | early endosome antigen [Source:NCBI gene (formerly Entrezgene);Acc:817784]; symbol=AT2G32240; hit=AT2G32240; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G32240 (AT2G32240)early endosome antigen [Source:NCBI gene (formerly Entrezgene);Acc:817784] identity=40.6; qcov=1.04; evalue=0; confidence=medium |
| Rice | Os04g0614650- identity=34; qcov=0.446; evalue=1.18e-54; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF26581 (WIT1_2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009440 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057792743.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057792743.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057792743.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057792743.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057792743.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75092210 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B14,B26,B90,B92 |
Chr2:75092212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B110,B23 |
Chr2:75092448 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,B61 |
Chr2:75092501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr2:75092573 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B14,B26,B90,B92 |
Chr2:75092629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,C14,C42,C80 |
Chr2:75092662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C18 |
Chr2:75092710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:75092881 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B131,B6 |
Chr2:75092888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:75092971 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B108,B124,C23 |
Chr2:75092986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B50,B75,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792743.1PF26581
WIT1_2_N 191-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792743.1 |
Pfam | PF26581 |
WIT1_2_N | Domain | 191 | 325 | 5.5e-10 | 39.8 | WIT1/2, N-terminal helical bundle |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。