Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005500`

染色体: Chr02 坐标: 75145700-75149372 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005500`
名称	SmilChr02G005500
描述	uncharacterized oxidoreductase At1g06690, chloroplastic-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75145700 - 75149372 / `+`

ID 对照

NCBI Gene ID	`LOC131009463`
GeneID	`131009463`
locus_tag	`-`
NCBI Name	`LOC131009463`
原始查询	`SmilChr02G005500`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837179]; symbol=AT1G06690; hit=AT1G06690; species=arabidopsis; confidence=high
产物	NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837179]; symbol=AT1G06690; hit=AT1G06690; species=arabidopsis; confidence=high
Arabidopsis	`AT1G06690` (AT1G06690) NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837179] identity=70.3; qcov=0.842; evalue=2.76e-151; confidence=high
Rice	`Os07g0143000` - identity=73.2; qcov=0.773; evalue=9.39e-145; confidence=high
GO	GO:0004033 (GO:0004033); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00248 (Aldo_ket_red)
InterPro	-
eggNOG	-
NR	GeneID:131009463

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057792783.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057792783.1`
3	Nucleus	细胞核	0.00000	`XP_057792783.1`
4	Chromosome	染色体	0.00000	`XP_057792783.1`
5	Centromere	着丝粒	0.00000	`XP_057792783.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75145799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:75145808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr2:75145827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B11,B7,C37
`Chr2:75145843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B23,B54
`Chr2:75145845`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr2:75145866`	`A`	`AGC`	2bp_insertion	frameshift_variant	116	A11,A22,A23,A24,A25,A4,A5,A7,A8,A9,B1,B103,B107,B108,B110,B112,B114,B120,B122,B125,B134,B135,B136,B14,B16,B17,B18,B19,B2,B20,B21,B24,B25,B26,B28,B3,B35,B36,B4,B40,B46,B50,B52,B55,B56,B57,B58,B6,B65,B70,B72,B76,B77,B78,B80,B82,B86,B89,B91,B93,B95,B96,B97,C10,C13,C15,C16,C17,C19,C2,C20,C22,C23,C24,C25,C27,C28,C29,C30,C31,C32,C33,C34,C35,C38,C40,C41,C44,C45,C47,C50,C51,C52,C56,C58,C61,C64,C66,C67,C68,C7,C70,C73,C77,C78,C80,C82,C83,C84,C9,D10,D11,D3,D6,D7,D8
`Chr2:75145870`	`TAG`	`T`	2bp_deletion	frameshift_variant	116	A11,A22,A23,A24,A25,A4,A5,A7,A8,A9,B1,B103,B107,B108,B110,B112,B114,B120,B122,B125,B134,B135,B136,B14,B16,B17,B18,B19,B2,B20,B21,B24,B25,B26,B28,B3,B35,B36,B4,B40,B46,B50,B52,B55,B56,B57,B58,B6,B65,B70,B72,B76,B77,B78,B80,B82,B86,B89,B91,B93,B95,B96,B97,C10,C13,C15,C16,C17,C19,C2,C20,C22,C23,C24,C25,C27,C28,C29,C30,C31,C32,C33,C34,C35,C38,C40,C41,C44,C45,C47,C50,C51,C52,C56,C58,C61,C64,C66,C67,C68,C7,C70,C73,C77,C78,C80,C82,C83,C84,C9,D10,D11,D3,D6,D7,D8
`Chr2:75145876`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,C10,C27
`Chr2:75145889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:75145901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:75146822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,C49,C65
`Chr2:75146838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B42,B43,B73,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792783.1

365 aa

182

365

Aldo_ket_red

PF00248 Aldo_ket_red 48-350 aa

XP_057792784.1

348 aa

174

348

Aldo_ket_red

PF00248 Aldo_ket_red 48-304 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792783.1`	Pfam	`PF00248`	Aldo_ket_red	Domain	48	350	1.4e-56	192.5	Aldo/keto reductase family
`XP_057792784.1`	Pfam	`PF00248`	Aldo_ket_red	Domain	48	304	3.6e-45	155.0	Aldo/keto reductase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936800.1
GTTGAGATGAAGAAGCATATATAACTTATATCTTTTATTAAGATATCACAACCAAATTTTGGGCAAGAAATCAAAAACTCATTATCTAAGCATGGCTTTGCAATTGAGCAGTGCATGCTACTTCTCTGCATTGAGTAGGAGTGCGGTTGGTGCAGTTAGAGGCGGCAGTGTAGGTGCGAAGAAGGCTGAGGTGGAAAAAGTGAAGCTTGGAGGCTCCGAACTGCAGGTGACCCGGATTGGAATCGGATCTTGGTCGTGGG...

XM_057936801.1
GTTGAGATGAAGAAGCATATATAACTTATATCTTTTATTAAGATATCACAACCAAATTTTGGGCAAGAAATCAAAAACTCATTATCTAAGCATGGCTTTGCAATTGAGCAGTGCATGCTACTTCTCTGCATTGAGTAGGAGTGCGGTTGGTGCAGTTAGAGGCGGCAGTGTAGGTGCGAAGAAGGCTGAGGTGGAAAAAGTGAAGCTTGGAGGCTCCGAACTGCAGGTGACCCGGATTGGAATCGGATCTTGGTCGTGGG...

CDS

2 records

下载 CDS FASTA

LOC131009463
ATGGCTTTGCAATTGAGCAGTGCATGCTACTTCTCTGCATTGAGTAGGAGTGCGGTTGGTGCAGTTAGAGGCGGCAGTGTAGGTGCGAAGAAGGCTGAGGTGGAAAAAGTGAAGCTTGGAGGCTCCGAACTGCAGGTGACCCGGATTGGAATCGGATCTTGGTCGTGGGGCGACGCCACTTATTGGAATAACTTTGAATGGGATGACAGGAAACTAAAGGCAGCTACGGCTGCATTTGATGCCGGCATTGATTCCGGCAT...

Protein

2 records

下载 Protein FASTA

XP_057792783.1
MALQLSSACYFSALSRSAVGAVRGGSVGAKKAEVEKVKLGGSELQVTRIGIGSWSWGDATYWNNFEWDDRKLKAATAAFDAGIDSGITFFDTAEVYGSPMALGAMSSETLLGKFIKEREKRCQDLEVVVATKFSVFGWRLGRHSVVSALKDSLARLQLPSVDLYQLHWPAIWGDEGYIDGLADAVEQGLVKAVGVSNYSEKRLCAAYHQLKKRGVPLASNQVNYSLIYRWPEENGVKSACDELGITLIAYSPLAQGALSG...

XP_057792784.1
MALQLSSACYFSALSRSAVGAVRGGSVGAKKAEVEKVKLGGSELQVTRIGIGSWSWGDATYWNNFEWDDRKLKAATAAFDAGIDSGITFFDTAEVYGSPMALGAMSSETLLGKFIKEREKRCQDLEVVVATKFSVFGWRLGRHSVVSALKDSLARLQLPSVDLYQLHWPAIWGDEGYIDGLADAVEQGLVKAVGVSNYSEKRLCAAYHQLKKRGVPLASNQVNYSLIYRWPEENGVKSACDELGITLIAYSPLAQGALSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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