当前解析结果
SmilChr02G005501| 统一新 Gene ID | SmilChr02G005501 |
|---|---|
| 名称 | SmilChr02G005501 |
| 描述 | uncharacterized oxidoreductase At1g06690, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75149746 - 75154104 / + |
| NCBI Gene ID | LOC131009461 |
|---|---|
| GeneID | 131009461 |
| locus_tag | - |
| NCBI Name | LOC131009461 |
| 原始查询 | SmilChr02G005501 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837179]; symbol=AT1G06690; hit=AT1G06690; species=arabidopsis; confidence=high |
| 产物 | NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837179]; symbol=AT1G06690; hit=AT1G06690; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G06690 (AT1G06690)NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837179] identity=77.9; qcov=0.946; evalue=0; confidence=high |
| Rice | Os07g0143000- identity=82.4; qcov=0.894; evalue=0; confidence=high |
| GO | GO:0004033 (GO:0004033); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00248 (Aldo_ket_red) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009461 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057792781.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057792781.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792781.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792781.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792781.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75150135 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,B25,B52,B57,C22 |
Chr2:75151962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,A6,B113,B136,D3 |
Chr2:75152283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C24,C50 |
Chr2:75152308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr2:75152332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:75152492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C76,D8 |
Chr2:75152659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B119,C35,C42,C55,C87 |
Chr2:75152902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:75152934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B110,B27,B59,C13,C63 |
Chr2:75152945 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A23,B110,B35 |
Chr2:75152945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B110,B35 |
Chr2:75152968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792781.1PF00248
Aldo_ket_red 52-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792781.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 52 | 354 | 5.9e-59 | 200.3 | Aldo/keto reductase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。