Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005506

染色体: Chr02 坐标: 75185627-75191607 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005506
名称SmilChr02G005506
描述receptor-like protein EIX1
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向75185627 - 75191607 / +

ID 对照

NCBI Gene IDLOC131009445
GeneID131009445
locus_tag-
NCBI NameLOC131009445
原始查询SmilChr02G005506

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor-like protein EIX1
产物receptor-like protein EIX1
ArabidopsisAT2G34930 (AT2G34930)
disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058]
identity=31.3; qcov=1.04; evalue=3.99e-116; confidence=low
RiceOs08g0541300
-
identity=33.3; qcov=1.04; evalue=6.48e-132; confidence=low
GOGO:0005515 (protein binding)
KEGGsmil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131009445

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057792747.1
2 Nucleus 细胞核 0.00000 XP_057792747.1
3 Chromosome 染色体 0.00000 XP_057792747.1
4 Centromere 着丝粒 0.00000 XP_057792747.1
5 Chromatin 染色质 0.00000 XP_057792747.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:75185722 CAA C 2bp_deletion frameshift_variant 36 A1,A19,A20,A23,A7,B1,B100,B106,B107,B115,B120,B17,B2,B29,B33,B34,B35,B44,B48,B65,B68,B71,B75,B79,B80,B94,C2,C21,C22,C37,C47,C55,C72,C79,C8,C81
Chr2:75185741 TA T 1bp_deletion frameshift_variant 8 B12,B131,B137,B138,B24,B93,C48,C71
Chr2:75185809 G A EMS_canonical_SNV CDS_variant 2 B58,C1
Chr2:75185823 C T EMS_canonical_SNV CDS_variant 5 B57,B73,C20,C74,C75
Chr2:75185898 C T EMS_canonical_SNV CDS_variant 1 B23
Chr2:75185910 C T EMS_canonical_SNV CDS_variant 1 C79
Chr2:75185913 G A EMS_canonical_SNV CDS_variant 3 A10,C40,C70
Chr2:75185925 G A EMS_canonical_SNV CDS_variant 1 B140
Chr2:75185927 C T EMS_canonical_SNV CDS_variant 3 B23,C79,D11
Chr2:75185929 G A EMS_canonical_SNV CDS_variant 1 B140
Chr2:75185940 C T EMS_canonical_SNV CDS_variant 3 B50,B78,C19
Chr2:75185953 G A EMS_canonical_SNV CDS_variant 2 A10,B101

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792747.1
892 aa
N
1
446
892
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_14
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 48-86 aa PF00560 LRR_1 117-135 aa PF00560 LRR_1 141-163 aa PF00560 LRR_1 200-221 aa PF23598 LRR_14 200-376 aa PF13855 LRR_8 216-258 aa PF00560 LRR_1 223-244 aa PF00560 LRR_1 247-264 aa PF00560 LRR_1 415-430 aa PF13855 LRR_8 481-540 aa PF00560 LRR_1 505-527 aa PF00560 LRR_1 529-551 aa PF00560 LRR_1 603-624 aa PF00560 LRR_1 681-701 aa PF00560 LRR_1 705-726 aa PF00560 LRR_1 753-770 aa
XP_057792748.1
892 aa
N
1
446
892
LRRNT_2
LRR_1
LRR_1
LRR_1
LRR_14
LRR_8
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 48-86 aa PF00560 LRR_1 117-135 aa PF00560 LRR_1 141-163 aa PF00560 LRR_1 200-221 aa PF23598 LRR_14 200-376 aa PF13855 LRR_8 216-258 aa PF00560 LRR_1 223-244 aa PF00560 LRR_1 247-264 aa PF00560 LRR_1 415-430 aa PF13855 LRR_8 481-540 aa PF00560 LRR_1 505-527 aa PF00560 LRR_1 529-551 aa PF00560 LRR_1 603-624 aa PF00560 LRR_1 681-701 aa PF00560 LRR_1 705-726 aa PF00560 LRR_1 753-770 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792747.1 Pfam PF08263 LRRNT_2 Family 48 86 5.2e-12 46.6 Leucine rich repeat N-terminal domain
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 117 135 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 141 163 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 200 221 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF23598 LRR_14 Repeat 200 376 6.5e-31 108.1 Leucine-rich repeat region
XP_057792747.1 Pfam PF13855 LRR_8 Repeat 216 258 3.1e-41 139.6 Leucine rich repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 223 244 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 247 264 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 415 430 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF13855 LRR_8 Repeat 481 540 3.1e-41 139.6 Leucine rich repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 505 527 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 529 551 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 603 624 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 681 701 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 705 726 1.6e-52 164.8 Leucine Rich Repeat
XP_057792747.1 Pfam PF00560 LRR_1 Repeat 753 770 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF08263 LRRNT_2 Family 48 86 5.2e-12 46.6 Leucine rich repeat N-terminal domain
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 117 135 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 141 163 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 200 221 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF23598 LRR_14 Repeat 200 376 6.5e-31 108.1 Leucine-rich repeat region
XP_057792748.1 Pfam PF13855 LRR_8 Repeat 216 258 3.1e-41 139.6 Leucine rich repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 223 244 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 247 264 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 415 430 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF13855 LRR_8 Repeat 481 540 3.1e-41 139.6 Leucine rich repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 505 527 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 529 551 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 603 624 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 681 701 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 705 726 1.6e-52 164.8 Leucine Rich Repeat
XP_057792748.1 Pfam PF00560 LRR_1 Repeat 753 770 1.6e-52 164.8 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057936765.1
GTGTCTCATTGAAACAAACTTCCTAAAAATCAATTTTCACACTATAATCCAACTCTATATATAGATATACTGATTAAATGGAGACTTACATCCCACAAATACTTCACACATATATAAAAACAACCATGATTTCTCACAAAAGCATTGCTATAAAATTCATTTTTCTTGTTTGCCTATGCTTTGAGTACAAATCTTTCCTTGTTTCAGGAAGGTGCCTAGAGAGGGAGAGAGAAGCACTCATGAGGTTCAAGAACGGCCTC...
XM_057936764.1
CATTGAAACAAACTTCCTAAAAATCAATTTTCACACTATAATCCAACTCTATATATAGATATACTGATTAAATGGAGACTTACATCCCACAAATACTTCACACATATATAAAAACAACCATGATTTCTCACAAAAGCATTGCTATAAAATTCATTTTTCTTGTTTGCCTATGCTTTGAGTACAAATCTTTCCTTGTTTCAGGAAGGTGCCTAGAGAGGGAGAGAGAAGCACTCATGAGGTTCAAGAACGGCCTCATCGAC...

CDS

2 records

下载 CDS FASTA
LOC131009445
ATGGAGACTTACATCCCACAAATACTTCACACATATATAAAAACAACCATGATTTCTCACAAAAGCATTGCTATAAAATTCATTTTTCTTGTTTGCCTATGCTTTGAGTACAAATCTTTCCTTGTTTCAGGAAGGTGCCTAGAGAGGGAGAGAGAAGCACTCATGAGGTTCAAGAACGGCCTCATCGACGCCCACGACACCCTATCCTCGTGGCGGGCCCAGCCAGACTGCTGTGACTGGGAGGGCGTCGTGTGCAGCAA...
LOC131009445
ATGGAGACTTACATCCCACAAATACTTCACACATATATAAAAACAACCATGATTTCTCACAAAAGCATTGCTATAAAATTCATTTTTCTTGTTTGCCTATGCTTTGAGTACAAATCTTTCCTTGTTTCAGGAAGGTGCCTAGAGAGGGAGAGAGAAGCACTCATGAGGTTCAAGAACGGCCTCATCGACGCCCACGACACCCTATCCTCGTGGCGGGCCCAGCCAGACTGCTGTGACTGGGAGGGCGTCGTGTGCAGCAA...

Protein

2 records

下载 Protein FASTA
XP_057792747.1
METYIPQILHTYIKTTMISHKSIAIKFIFLVCLCFEYKSFLVSGRCLEREREALMRFKNGLIDAHDTLSSWRAQPDCCDWEGVVCSNATTAHVVALLLNNSTLGGEIVSALLDLTRLSRLDLSYNRFNGTRIPGFLGSMKRLQHLNLSMASLAGGIPPELGNLTHLRTLDLSNDLLEDDTSYLNTLNGPIPNIFAGLNLLELLDLSGNMLQGEIPKSLGNMSHLQVLNLHNNDLQGHIHQTFVNFPSLQNLDLGYNQLSG...
XP_057792748.1
METYIPQILHTYIKTTMISHKSIAIKFIFLVCLCFEYKSFLVSGRCLEREREALMRFKNGLIDAHDTLSSWRAQPDCCDWEGVVCSNATTAHVVALLLNNSTLGGEIVSALLDLTRLSRLDLSYNRFNGTRIPGFLGSMKRLQHLNLSMASLAGGIPPELGNLTHLRTLDLSNDLLEDDTSYLNTLNGPIPNIFAGLNLLELLDLSGNMLQGEIPKSLGNMSHLQVLNLHNNDLQGHIHQTFVNFPSLQNLDLGYNQLSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器