Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005511`

染色体: Chr02 坐标: 75235004-75238347 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005511`
名称	SmilChr02G005511
描述	receptor-like protein EIX1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75235004 - 75238347 / `+`

ID 对照

NCBI Gene ID	`LOC131009476`
GeneID	`131009476`
locus_tag	`-`
NCBI Name	`LOC131009476`
原始查询	`SmilChr02G005511`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX1
产物	receptor-like protein EIX1
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=36.6; qcov=0.973; evalue=3.51e-149; confidence=medium
Rice	`Os01g0601675` - identity=37; qcov=1.03; evalue=1.94e-161; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131009476

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792804.1`
2	Nucleus	细胞核	0.00000	`XP_057792804.1`
3	Chromosome	染色体	0.00000	`XP_057792804.1`
4	Centromere	着丝粒	0.00000	`XP_057792804.1`
5	Chromatin	染色质	0.00000	`XP_057792804.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75235207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C45,C87,D10
`Chr2:75235217`	`T`	`TG`	1bp_insertion	frameshift_variant	4	B130,B83,C32,D5
`Chr2:75235217`	`T`	`TG`	1bp_insertion	CDS_variant	4	B130,B83,C32,D5
`Chr2:75235225`	`G`	`GA`	1bp_insertion	frameshift_variant	3	B126,C23,C30
`Chr2:75235225`	`G`	`GA`	1bp_insertion	CDS_variant	3	B126,C23,C30
`Chr2:75235228`	`TC`	`T`	1bp_deletion	frameshift_variant	5	B130,B83,C32,D5,D7
`Chr2:75235228`	`TC`	`T`	1bp_deletion	CDS_variant	5	B130,B83,C32,D5,D7
`Chr2:75235237`	`GGA`	`G`	2bp_deletion	frameshift_variant	6	B13,B2,B29,B46,C23,C28
`Chr2:75235285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B29,C70,C8
`Chr2:75235287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B127,C30,C56
`Chr2:75235293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B75
`Chr2:75235299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B113,B50,C6,C69,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792804.1

942 aa

471

942

LRRNT_2

LRR_6

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

PF08263 LRRNT_2 33-69 aa PF13516 LRR_6 101-115 aa PF00560 LRR_1 127-149 aa PF00560 LRR_1 277-298 aa PF00560 LRR_1 330-347 aa PF13855 LRR_8 353-413 aa PF00560 LRR_1 354-375 aa PF00560 LRR_1 378-394 aa PF00560 LRR_1 497-514 aa PF00560 LRR_1 543-564 aa PF00560 LRR_1 567-589 aa PF00560 LRR_1 639-661 aa PF00560 LRR_1 743-765 aa PF00560 LRR_1 768-788 aa PF13516 LRR_6 791-804 aa PF00560 LRR_1 792-813 aa PF00560 LRR_1 816-833 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792804.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	1.6e-11	45.0	Leucine rich repeat N-terminal domain
`XP_057792804.1`	Pfam	`PF13516`	LRR_6	Repeat	101	115	4.9e-08	33.2	Leucine Rich repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	277	298	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	330	347	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF13855`	LRR_8	Repeat	353	413	3.8e-40	136.2	Leucine rich repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	354	375	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	378	394	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	497	514	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	543	564	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	567	589	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	639	661	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	743	765	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	768	788	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF13516`	LRR_6	Repeat	791	804	4.9e-08	33.2	Leucine Rich repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	792	813	6.9e-55	171.8	Leucine Rich Repeat
`XP_057792804.1`	Pfam	`PF00560`	LRR_1	Repeat	816	833	6.9e-55	171.8	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936821.1
GCAAGGCGTCGAAGGAAGTCACTTTAATTTCATTGTTAGGATCGGAATTGTATAATTTTACAGTCAGTTTGAAATTGACATTTAATTTTGCCTATTTAAACCATCCAACTTGAGACTATGGAGTATCCCACAAACATATATCTCTTCCACACATCGATAGAGAAAGCATGATTTCTGATAAAGGAATATCAATCAAATTTCTTCTTTTTCTTCTACTTTGTGTCTCTGTTTCAGGAGATGATGCAGAAGTGAGATGCATT...

CDS

1 records

下载 CDS FASTA

LOC131009476
ATGATTTCTGATAAAGGAATATCAATCAAATTTCTTCTTTTTCTTCTACTTTGTGTCTCTGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAACAGCCTCGTCGGTGATGATGGTTTTCTCTCGTCATGGCGAAGTGACGAATGCTGCGAATGGTATGGTGTTGAGTGCAGCAACACGACTCGCCATGTCATCGCCCTCCAACTTAACGCTTGTGATTATGATGG...

Protein

1 records

下载 Protein FASTA

XP_057792804.1
MISDKGISIKFLLFLLLCVSVSGDDAEVRCIAREREALLSFKNSLVGDDGFLSSWRSDECCEWYGVECSNTTRHVIALQLNACDYDGALQGKVGSSLLELHHLNYLDLSCNDFGGNSIPQFIGSMKQLQHLFLRRSQFSGIIPPQIGNLTNLRSLGLSYNSLRIENLDWLSSLSLLSFLGLSQIDLSHTNWLQHILSLHSLNELYLNSCNLKDNSEPFLNSSSTSLLSILGVSDNNLTSSSFDWLSNINTSLVEIDLSGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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