当前解析结果
SmilChr02G005519| 统一新 Gene ID | SmilChr02G005519 |
|---|---|
| 名称 | SmilChr02G005519 |
| 描述 | receptor-like protein EIX1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75290995 - 75292112 / - |
| NCBI Gene ID | LOC131010027 |
|---|---|
| GeneID | 131010027 |
| locus_tag | - |
| NCBI Name | LOC131010027 |
| 原始查询 | SmilChr02G005519 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein EIX1 |
| 产物 | receptor-like protein EIX1 |
| Arabidopsis | AT2G34930 (AT2G34930)disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=40.7; qcov=0.851; evalue=1.28e-39; confidence=medium |
| Rice | Os06g0140300- identity=37.2; qcov=0.915; evalue=1.34e-43; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010027 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793404.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057793404.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057793404.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793404.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793404.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75291009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B113,B122,C36,C46,C70 |
Chr2:75291040 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,B58,C36,C70 |
Chr2:75291049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr2:75291086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C20,C36 |
Chr2:75291109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr2:75291157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr2:75291207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,C13 |
Chr2:75291286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B93 |
Chr2:75291304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,C42 |
Chr2:75291336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
Chr2:75291342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:75291352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793404.1PF00560
LRR_1 62-84 aa
PF00560
LRR_1 86-108 aa
PF00560
LRR_1 162-183 aa
PF00560
LRR_1 186-205 aa
PF00560
LRR_1 212-233 aa
PF13855
LRR_8 288-343 aa
PF00560
LRR_1 289-310 aa
PF00560
LRR_1 313-329 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 62 | 84 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 86 | 108 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 162 | 183 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 186 | 205 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 212 | 233 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057793404.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 288 | 343 | 5.5e-24 | 84.4 | Leucine rich repeat |
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 289 | 310 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
XP_057793404.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 313 | 329 | 1.9e-22 | 75.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。