Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005523`

染色体: Chr02 坐标: 75309256-75313278 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005523`
名称	SmilChr02G005523
描述	receptor-like protein EIX2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75309256 - 75313278 / `-`

ID 对照

NCBI Gene ID	`LOC131009485`
GeneID	`131009485`
locus_tag	`-`
NCBI Name	`LOC131009485`
原始查询	`SmilChr02G005523`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX2
产物	receptor-like protein EIX2
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=39.7; qcov=0.621; evalue=2.84e-53; confidence=medium
Rice	`Os11g0567600` - identity=37.4; qcov=0.784; evalue=1.3e-65; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:131009485

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792813.1`
2	Nucleus	细胞核	0.00000	`XP_057792813.1`
3	Chromosome	染色体	0.00000	`XP_057792813.1`
4	Centromere	着丝粒	0.00000	`XP_057792813.1`
5	Chromatin	染色质	0.00000	`XP_057792813.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75309642`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A14
`Chr2:75309642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A14
`Chr2:75309673`	`TAG`	`T`	2bp_deletion	frameshift_variant	1	B65
`Chr2:75309673`	`TAG`	`T`	2bp_deletion	CDS_variant	1	B65
`Chr2:75309705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B121,B86,C14
`Chr2:75309816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:75309838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr2:75309839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr2:75309866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr2:75309873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr2:75309884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,A8,B66,C27,C82
`Chr2:75309897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B140,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792813.1

491 aa

246

491

LRRNT_2

LRR_1

PF08263 LRRNT_2 53-89 aa PF00560 LRR_1 123-144 aa PF00560 LRR_1 146-166 aa PF00560 LRR_1 219-240 aa PF00560 LRR_1 297-318 aa PF00560 LRR_1 321-341 aa PF00560 LRR_1 345-366 aa PF00560 LRR_1 369-386 aa

XP_057792814.1

491 aa

246

491

LRRNT_2

LRR_1

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792813.1`	Pfam	`PF08263`	LRRNT_2	Family	53	89	2.2e-10	41.3	Leucine rich repeat N-terminal domain
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	123	144	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	146	166	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	219	240	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	297	318	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	321	341	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	345	366	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792813.1`	Pfam	`PF00560`	LRR_1	Repeat	369	386	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF08263`	LRRNT_2	Family	53	89	2.2e-10	41.3	Leucine rich repeat N-terminal domain
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	123	144	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	146	166	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	219	240	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	297	318	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	321	341	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	345	366	5.1e-26	85.8	Leucine Rich Repeat
`XP_057792814.1`	Pfam	`PF00560`	LRR_1	Repeat	369	386	5.1e-26	85.8	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936830.1
TTAATTTTATCATTATTGTAAATTGGGTGTATGTACTTTCACCTTTTGTTTTCATAGTCTTTTTAATTTCGTTTGTAAACTTTATGGTGGTGTACATATATTTCTTCTAGAATGGATGTTTTTGTTTTTGTATACAAGGCAAACACTGCCAAATAAGCTCGATTTTAAAAGTATTGATGGGTGTTTGTGTTTTGTATACAAGGCAAACGACATAGTTTTGTTTCTGAAAATATTAGGAATGTTGTATCATTCTAAAAGTG...

XM_057936831.1
TAATTTTATCATTATTGTAAATTGGGTGTATGTACTTTCACCTTTTGTTTTCATAGTCTTTTTAATTTCGTTTGTAAACTTTATGGTGGTGTACATATATTTCTTCTAGAATGGATGTTTTTGTTTTTGTATACAAGGCAAACACTGCCAAATAAGCTCGATTTTAAAAGTATTGATGGGTGTTTGTGTTTTGTATACAAGGCAAACGACATAGTTTTGTTTCTGAAAATATTAGGAATGTTGTATCATTCTAAAAGTGG...

CDS

2 records

下载 CDS FASTA

LOC131009485
ATGGAGTATCCCACAAACATATATCTCTCTCCCTTCCACACATCAATATATAGAGAAAGCATGATTTCTGATAAAGGAATATCAATCAAATTTCTTCTTTTTCTTCTAGTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAATGGCCTCATCGGCGATGATGGTATTCTCTCTACATGGCGAAGTGACGAATGCTGTGAATGGTATGGTGTTGA...

Protein

2 records

下载 Protein FASTA

XP_057792813.1
MEYPTNIYLSPFHTSIYRESMISDKGISIKFLLFLLVCVYVSGDDAEVRCIAREREALLSFKNGLIGDDGILSTWRSDECCEWYGVECSNTTRHVIALQLNTCDLEGVLQGEVPDCWEKMPYLSSLNLADNSFSGEIPRSFGSLLHLIALQLRGNNLSGELPSTLRLCQELELIDVGGNELTGEIPTWIDELFGMVFLNLHRNKFHGSIPGRICNLTRIRILDLSINKLFGKIPDCFNNFTALAQLNTIQAQRWVGYYYV...

XP_057792814.1
MEYPTNIYLSPFHTSIYRESMISDKGISIKFLLFLLVCVYVSGDDAEVRCIAREREALLSFKNGLIGDDGILSTWRSDECCEWYGVECSNTTRHVIALQLNTCDLEGVLQGEVPDCWEKMPYLSSLNLADNSFSGEIPRSFGSLLHLIALQLRGNNLSGELPSTLRLCQELELIDVGGNELTGEIPTWIDELFGMVFLNLHRNKFHGSIPGRICNLTRIRILDLSINKLFGKIPDCFNNFTALAQLNTIQAQRWVGYYYV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器