Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005524`

染色体: Chr02 坐标: 75315098-75318433 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005524`
名称	SmilChr02G005524
描述	receptor-like protein EIX1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75315098 - 75318433 / `-`

ID 对照

NCBI Gene ID	`LOC131009484`
GeneID	`131009484`
locus_tag	`-`
NCBI Name	`LOC131009484`
原始查询	`SmilChr02G005524`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX1
产物	receptor-like protein EIX1
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=37.2; qcov=0.979; evalue=2.15e-149; confidence=medium
Rice	`Os01g0601675` - identity=37.6; qcov=1; evalue=3.19e-162; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131009484

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792812.1`
2	Nucleus	细胞核	0.00000	`XP_057792812.1`
3	Chromosome	染色体	0.00000	`XP_057792812.1`
4	Centromere	着丝粒	0.00000	`XP_057792812.1`
5	Chromatin	染色质	0.00000	`XP_057792812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75315591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B117,C34,C60
`Chr2:75315611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,D11
`Chr2:75315671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:75315721`	`T`	`TGC`	2bp_insertion	frameshift_variant	9	B105,B118,B30,B47,B5,B51,C35,C43,C73
`Chr2:75315738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,A22,A3
`Chr2:75315758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B76,B81,C51
`Chr2:75315765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B121,C46
`Chr2:75315769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,C70,D1
`Chr2:75315788`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B82,C57,C75
`Chr2:75315801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,B65
`Chr2:75315818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:75315841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B97

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792812.1

936 aa

468

936

LRRNT_2

LRR_6

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_4

LRR_1

LRR_6

LRR_1

PF08263 LRRNT_2 33-69 aa PF13516 LRR_6 101-115 aa PF00560 LRR_1 102-121 aa PF00560 LRR_1 127-149 aa PF13855 LRR_8 127-183 aa PF00560 LRR_1 151-173 aa PF00560 LRR_1 250-269 aa PF00560 LRR_1 276-297 aa PF13855 LRR_8 352-412 aa PF00560 LRR_1 496-512 aa PF13855 LRR_8 543-603 aa PF00560 LRR_1 544-565 aa PF12799 LRR_4 544-579 aa PF00560 LRR_1 568-590 aa PF00560 LRR_1 643-662 aa PF00560 LRR_1 664-686 aa PF00560 LRR_1 742-763 aa PF00560 LRR_1 766-786 aa PF13516 LRR_6 789-803 aa PF00560 LRR_1 790-811 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792812.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	9.8e-10	39.3	Leucine rich repeat N-terminal domain
`XP_057792812.1`	Pfam	`PF13516`	LRR_6	Repeat	101	115	1.7e-09	37.7	Leucine Rich repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	102	121	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF13855`	LRR_8	Repeat	127	183	1.7e-45	153.3	Leucine rich repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	151	173	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	250	269	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	276	297	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF13855`	LRR_8	Repeat	352	412	1.7e-45	153.3	Leucine rich repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	496	512	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF13855`	LRR_8	Repeat	543	603	1.7e-45	153.3	Leucine rich repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	544	565	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF12799`	LRR_4	Repeat	544	579	2.7e-41	139.4	Leucine Rich repeats (2 copies)
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	568	590	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	643	662	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	664	686	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	742	763	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	766	786	8.5e-59	183.4	Leucine Rich Repeat
`XP_057792812.1`	Pfam	`PF13516`	LRR_6	Repeat	789	803	1.7e-09	37.7	Leucine Rich repeat
`XP_057792812.1`	Pfam	`PF00560`	LRR_1	Repeat	790	811	8.5e-59	183.4	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936829.1
ATTTAAACCATCCAACTTGAGACTATGGAGTATTCCACAAACATATATCTCTTCCACTCATCAATAGAGAAAGCATGATTTCTGATAAAGGAATTCCAATCAAATTTCTTCTTTTTGTTCTACTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAAAACCCTCATCGGTGATGATGGTATTCTCTCGTCATGGCGAAATGATGAATGCTGCGAA...

CDS

1 records

下载 CDS FASTA

LOC131009484
ATGATTTCTGATAAAGGAATTCCAATCAAATTTCTTCTTTTTGTTCTACTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAAAACCCTCATCGGTGATGATGGTATTCTCTCGTCATGGCGAAATGATGAATGCTGCGAATGGTATGGTGTTGTGTGCAGCAACACTACTCGCCATGTCATCGCCCTCCAACTTAATACTTGTGATTTGGAAGG...

Protein

1 records

下载 Protein FASTA

XP_057792812.1
MISDKGIPIKFLLFVLLCVYVSGDDAEVRCIAREREALLSFKKTLIGDDGILSSWRNDECCEWYGVVCSNTTRHVIALQLNTCDLEGVLQGKVGSSLLELHHLNYLDLSCNDFGGNPIPEFIGSMKQLQRLYLKGSHFSGIIPPQIGNLTNLRSLSLSYNSLTTENLDWLSSLSLLSFLGLSQINLSHTNWLQHILRLHSLSELYLNSCNLKDTKPFLNSSSKSHLSILVVSDNNLTSSSFDWLSNLNTSLVEIDLSHNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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