Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005537`

染色体: Chr02 坐标: 75404654-75408191 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005537`
名称	SmilChr02G005537
描述	uncharacterized SmilChr02G005537
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75404654 - 75408191 / `-`

ID 对照

NCBI Gene ID	`LOC131009498`
GeneID	`131009498`
locus_tag	`-`
NCBI Name	`LOC131009498`
原始查询	`SmilChr02G005537`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Prefoldin chaperone subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:839119]; symbol=AT1G03760; hit=AT1G03760; species=arabidopsis; confidence=low
产物	Prefoldin chaperone subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:839119]; symbol=AT1G03760; hit=AT1G03760; species=arabidopsis; confidence=low
Arabidopsis	`AT1G03760` (AT1G03760) Prefoldin chaperone subunit family protein [Source:NCBI gene (formerly Entrezgene);Acc:839119] identity=34.2; qcov=1.28; evalue=2.12e-27; confidence=low
Rice	`-` -
GO	GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0003682 (chromatin binding); GO:0003714 (transcription corepressor activity); GO:0010923 (negative regulation of phosphatase activity); GO:0019212 (phosphatase inhibitor activity)
KEGG	-
Pfam	PF02996 (Prefoldin)
InterPro	-
eggNOG	-
NR	GeneID:131009498

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792846.1`
2	Cytoplasm	细胞质	1.00000	`XP_057792848.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057792846.1`
4	Trans-golgi network	Trans-golgi network	0.40000	`XP_057792848.1`
5	Vesicle	囊泡	0.40000	`XP_057792848.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75404887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr2:75404890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:75404904`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C26
`Chr2:75404904`	`TC`	`T`	1bp_deletion	CDS_variant	1	C26
`Chr2:75404924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C26
`Chr2:75405188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:75405193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B108,B140,C13,C23
`Chr2:75405227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr2:75405228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B93
`Chr2:75405255`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A19,B11,B112,C37,C47
`Chr2:75405814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:75405870`	`GCC`	`G`	2bp_deletion	frameshift_variant	4	B9,C5,C86,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792846.1

332 aa

166

332

Prefoldin

PF02996 Prefoldin 27-138 aa

XP_057792847.1

328 aa

164

328

Prefoldin

PF02996 Prefoldin 27-138 aa

XP_057792848.1

251 aa

126

251

Prefoldin

PF02996 Prefoldin 4-57 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792846.1`	Pfam	`PF02996`	Prefoldin	Coiled-coil	27	138	2.5e-21	76.6	Prefoldin subunit
`XP_057792847.1`	Pfam	`PF02996`	Prefoldin	Coiled-coil	27	138	2.4e-21	76.6	Prefoldin subunit
`XP_057792848.1`	Pfam	`PF02996`	Prefoldin	Coiled-coil	4	57	4.3e-07	30.6	Prefoldin subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936863.1
ATGTGTATAATCATAGTAGATGTTAGAAAATTGTCATCGTAACTCTTTGAAATAGCTCAAAAACTCGAAATATTTGATAGAAAATTAAAATAAAAGAATAAAGTCACCACCAACACACATAATAAAATATTTAGGCTATTTGTATATATACGATAAGAAAAATATCAAGTTAACTCTAAAATTTTTATCAGATTTATTTACTATTCAAGAATCAATGTTATTACCTCAAAAAAAAAAAAATACAAAAAATTAGAATAACA...

XM_057936864.1
TGGTTTGAAACATTTTGTGGTTTTCTGTGAAACAAACACTACGACGGAGCTCACACCAGAATCACTACACCGTCGTCGCCGTCGCGATATCTCCACGCCGAAGTCCTCCATCGCCCCTTAAGGTGGTCGCAGCTAGGATTTGGGTGGCGGTTATGAGCTGTTGTGATTTTATTTTAAGAATTCTGGTTGTGAATCGGATTATGAGTTGAGGTGAGGTCGAATGGTCCATTGTTTGACTAGAGATTGTTCGACGAGAAACC...

CDS

3 records

下载 CDS FASTA

LOC131009498
ATGGCGAAGAAGGGGACGGTGAGGGAGCTCTCCTCCATTTTTCCTGCGGAGGAAGCGCAGAAGGCGTCAATGCGGGTGCAGGAGACAGTTGCCGAGCGCCGCCGCGAGCTCGAAAAACTCAGGAGCTTCATGGACGATAACACCAGCTTAATAAACCTCGTTCGGAAACTTCCCGACGAAACTCACCACGATATCATGGTTCCGTTTGGGCAGGCAGCCTTTTTTCCCGGCCGAATGACTAACCCTAATAAATTTTTGGT...

Protein

3 records

下载 Protein FASTA

XP_057792846.1
MAKKGTVRELSSIFPAEEAQKASMRVQETVAERRRELEKLRSFMDDNTSLINLVRKLPDETHHDIMVPFGQAAFFPGRMTNPNKFLVLLGEGYHAERSAKQTVEILKRRGKALETQIESLNAVMEDLKLEASFFDNTAHESAEGVVEIREDYVEDEEAPSGTAPTSGNKRSDSAPPLEVDNGEAAVEDEEYARILARMAELEKEEEEAEEANGSDEVKQLQNEQDKTLRRDSTDQEVRSIPAATREAPLVSKGTHPEGAS...

XP_057792847.1
MAKKGTVRELSSIFPAEEAQKASMRVQETVAERRRELEKLRSFMDDNTSLINLVRKLPDETHHDIMVPFGQAAFFPGRMTNPNKFLVLLGEGYHAERSAKQTVEILKRRGKALETQIESLNAVMEDLKLEASFFDNTAHESAEGVVEIREDYVEDEEAPSGTAPTSGNKRSDSAPPLEVDNGEAAVEDEEYARILARMAELEKEEEEAEEANGSDEVKQLQNEQDKTLRRDSTDQEVRSIPAATREAPLVSKEGASHGDH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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